Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_2758 |
Symbol | |
ID | 8226330 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | + |
Start bp | 3410992 |
End bp | 3412731 |
Gene Length | 1740 bp |
Protein Length | 579 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 644930587 |
Product | alpha amylase catalytic region |
Protein accession | YP_003087138 |
Protein GI | 255036517 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0366] Glycosidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.435679 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.479819 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTGCCG TCAACAAGGA CAAATTCGTT ATATACCAGA TATTTACACG ACTCTTCGGC AACCGGAACA CGACCAACAA GGTGTACGGG ACGATCGAAG AGAACGGGTG CGGAAAATTC AACGACATCG ACGATACCGC ACTGGCCGCA TTGAAGGATT TCGGCGTCAC GCACCTTTGG TACACCGGCG TGCTCGAACA TGCCACGCTC ACCGATTATT CGCAATTCGG CATTAATCCC GACCATCCGC TGATCGTAAA AGGCATTGCC GGCTCGCCTT ATGCCGTAAA AGATTATTAC GATGTGGACC CCGACCTCGC CGTGGAGGTG CCAAACCGGA TGCAGGAGTT CGAAAACCTC GTCGCGCGTA CGCATTCCCA CGATTTGAAA GTAATCATCG ACTTCATTCC GAACCATGTC GCCCGGCAAT ACCAGTCCGA CGTCCGCCCC GAGGGCGTGC GGGATTTTGG TGAAGATGAC GACGACACGG TTGATTTTAG CCCTTCCAAT AACTTTTATT ACATTCCAAA CCACGACTTT GTGGTGCCCG AAGGCCACAA ACCGCCGCTG CCCGTGACAA CGCCCTACCA CGAGCGTCCC GCCAAAGCCA CCGGCAACGA CGTGTTCCAG GCCCAGCCGA GCCAGTACGA CTGGTACGAA ACCGTAAAAC TGAACTATGG CGTGGATTAC CTCAACGGCC GCGCATTGCA TTTCGACCCT GTTCCTTCCA CCTGGCTCAA AATGCGAGAT ATCCTTATTT ACTGGACGCG CAAAGGCGTG GACGGTTTCC GTTGCGACAT GGCCGAAATG GTGCCGGTGG AGTTCTGGGG CTGGGTAATC CCGGAAGTGA AGCACGAAAA TCCTGCGGTG ATCTTCATCG CGGAGATCTA CAATCCATCC GAATACCGGA ATTACATCGA GTCGGGCAAG TTTGATTACC TGTACGATAA GGTGGGGCTG TATAATTCGC TGCGCCGGAT CGTGGAGGGG AATGGAACGG CGGAGGACAT TACGCGGGTA TGGCAGCAGG AGTCGGGCGA TTTCAGCGAG CATATGCTGC GGTTTCTGGA AAATCACGAC GAGCAGCGCA TTGCGTCGCG CTACTTTGCC GGGAACCCGT GGACGGCCCT GCCTGCGATG GTATTGAGCG CCACACTGCA CACGGGGCCG GTAATGCTCT ATTTCGGACA GGAATTGGGC GTGGACCCTA CCGAACAGGA AGGTTTCCAG GGTGAGGACG GCCGCACCAC CATTTTCGAT TACTGGGGCG TTCCCGAGTT TCAGCAATGG GTGAATGGCG GCCGGTATGA TGACGCGCTG CTCACGACCG AGCAGAAAAC GCTCCGCAGC TTTTACAAAG ATTTGAATGA ATTTGTATTG AAAAACGAAG CCGTGTATGC CGGCGGATTC TATGACCTGC AATATGTGAA TGCTTATGGG CAGTCTGCCA ACTACGACAA AACAATCATT TACAGCTATT TACGCCACAC AGCTAATCAA AAATTGCTGT TTGTGTACAA CTTCCACGAA TCCCGCACCG TAGAAACGAC AATTAAAATA CCGCAGGATG CCTGGGCCAA TGTGCTGAAA CTGGGCAAGA CCGGCTCGTA CAAACTTCGC CCCGTGTTTC CCGTCGGAAT GGTGCAGGTG CAGCTTCGGA CGGCCGATAT TACTTCCACG GGCGTGGGCA TCGAACTCCC ACCGATTTCC GCGTTTGTAT TCGAGATTGT GGCGAAGTAA
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Protein sequence | MPAVNKDKFV IYQIFTRLFG NRNTTNKVYG TIEENGCGKF NDIDDTALAA LKDFGVTHLW YTGVLEHATL TDYSQFGINP DHPLIVKGIA GSPYAVKDYY DVDPDLAVEV PNRMQEFENL VARTHSHDLK VIIDFIPNHV ARQYQSDVRP EGVRDFGEDD DDTVDFSPSN NFYYIPNHDF VVPEGHKPPL PVTTPYHERP AKATGNDVFQ AQPSQYDWYE TVKLNYGVDY LNGRALHFDP VPSTWLKMRD ILIYWTRKGV DGFRCDMAEM VPVEFWGWVI PEVKHENPAV IFIAEIYNPS EYRNYIESGK FDYLYDKVGL YNSLRRIVEG NGTAEDITRV WQQESGDFSE HMLRFLENHD EQRIASRYFA GNPWTALPAM VLSATLHTGP VMLYFGQELG VDPTEQEGFQ GEDGRTTIFD YWGVPEFQQW VNGGRYDDAL LTTEQKTLRS FYKDLNEFVL KNEAVYAGGF YDLQYVNAYG QSANYDKTII YSYLRHTANQ KLLFVYNFHE SRTVETTIKI PQDAWANVLK LGKTGSYKLR PVFPVGMVQV QLRTADITST GVGIELPPIS AFVFEIVAK
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