| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_2300 |
|---|
| Symbol | |
|---|
| ID | 8225872 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 2844101 |
|---|
| End bp | 2845468 |
|---|
| Gene Length | 1368 bp |
|---|
| Protein Length | 455 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644930135 |
|---|
| Product | glycoside hydrolase family 28 |
|---|
| Protein accession | YP_003086686 |
|---|
| Protein GI | 255036065 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG5434] Endopolygalacturonase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAATATT TTATGACTCA AAAATTACGG TTACTCGTCG TCGCATTTGC ATTGCTTGCC
GTTGGTTCCC GCGCCGACGT GCCGGTGAAA AAGCTCAAAG TTCCGGCGCG TTTTGAGATG
CCGGAGATTC TGGTACCCGA TTTCAGCAGA GTGAAGCGCT TCCTTATTAC CGATTTCGGC
GCGGTGGCGG GCGATAAGGA AAAAATTTCC GGGGCGATCC GGCAGGCTAT CGACGCGGCG
AACCAGGCAG GCGGCGGCAA GGTGGTAGTA CCTGCGGGCG AGTGGCTCAC GGGAAAGGTG
CATTTGAAAA GCAATGTGAA CCTGCACCTG GACAAAGGTG CGGTGCTGCT ATTTTCGGAA
AAGCCGGAGG ATTACCTGCC GGCGGTGCAT TCGAGCTGGG AGGGCATTGA ATGCTACAAT
TATTCGCCGC TGATTTATGC CTACCAATGC AAAAACGTGG CGATCACCGG CGAGGGCGAG
GTGCGGGCGA AAATGGAGGT TTGGAAAGAA TGGTTTGCCC GACCGAAACC CCATATGGAG
AGCATTAAGC GGCTTTATAA CCTCGCGCAG GACTACACGC CCGTGGAGCA GCGGCAGATG
GTGAACGACA CGGCGCATTT GCGGCCGCAG TTTATCCAGT TTAACCGGTG CGAAAATGTG
CTGATGGAAG GCTTTACGGT CACCAATAGC CCATTCTGGA CAATCCATCC CTACCTGTGC
AAGAATGTCG TGATCAGCCG GTTGAAGGTA TACGCGCACG GGCATAACAA CGACGGCGTG
GACCCCGAAA TGAGCCAGAA CGTGTTCATC ACCGATTGCG TGTTCGACCA GGGCGATGAT
GCGATTGCCA TCAAATCCGG CCGCAATCCG GAAGGCTGGC GGCTGAAAAC GCCTTCGAAG
AACATCGTGA TCCGCAACCT GACGGTCAAA AACGGGCACC AATTGGTGGC GATCGGCAGC
GAGCTTTCGG GCGGGATCGA AAATGTGGAC ATTTCGCAGT GCCAGGTGGT CGACGGCGCG
AAGCTCAACC ATTTGCTTTT TATTAAAACC AATGAAAGAA TGGGGGGCTA TGTCAAAAAC
ATCTACGCCT CGAACCTGAC CGCCGGGAAA ATAGACCTGG GCGTGCTGGG CATCGAAACC
GACGTACTTT ACCAATGGCG CACGCTCGTA CCGACCAAAA TCCGCAAACT GACGCCGATC
TCGGACATTT ACCTGAGCAA TATCTCAGTG AAGGACGTGA AGTTCGAGTC GCGCATTTTG
GGGCAGAAAG AGCTGCCGGT TAAAAACGTA TCGATGAAAA ACATCACGAC CGGCAAGGTG
CAGGAACAAA AGGAAATCCA CGAAAACGTC CTCGATTTTC AGCATTGA
|
|---|
| Protein sequence | MEYFMTQKLR LLVVAFALLA VGSRADVPVK KLKVPARFEM PEILVPDFSR VKRFLITDFG
AVAGDKEKIS GAIRQAIDAA NQAGGGKVVV PAGEWLTGKV HLKSNVNLHL DKGAVLLFSE
KPEDYLPAVH SSWEGIECYN YSPLIYAYQC KNVAITGEGE VRAKMEVWKE WFARPKPHME
SIKRLYNLAQ DYTPVEQRQM VNDTAHLRPQ FIQFNRCENV LMEGFTVTNS PFWTIHPYLC
KNVVISRLKV YAHGHNNDGV DPEMSQNVFI TDCVFDQGDD AIAIKSGRNP EGWRLKTPSK
NIVIRNLTVK NGHQLVAIGS ELSGGIENVD ISQCQVVDGA KLNHLLFIKT NERMGGYVKN
IYASNLTAGK IDLGVLGIET DVLYQWRTLV PTKIRKLTPI SDIYLSNISV KDVKFESRIL
GQKELPVKNV SMKNITTGKV QEQKEIHENV LDFQH
|
|---|
| |