Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_2219 |
Symbol | |
ID | 8225791 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | - |
Start bp | 2718729 |
End bp | 2722049 |
Gene Length | 3321 bp |
Protein Length | 1106 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 644930055 |
Product | TonB-dependent receptor plug |
Protein accession | YP_003086606 |
Protein GI | 255035985 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.136302 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAAC TCGCCGCACA TTATGCATTC AAATGCATGA GGACCACCGT GGGCCCACTG CTGCTGGTGC TTGGATTCAT CCACCTTTCC TGGGCGCGAA CGGCCGCCGG ACAGGAGTTG CTCAATCGAA GTATATCCAT TACCGTTCAG GAAAAAAGTC TTAAATCGGT GCTGCATCTG ATCGAAAAGC AGGCTGAGAT CAAATTTTCG TATAGCCCGC AGGTGGTGCC CGTGCAACAG CGCGTGACGT TAAATGCTGA AAACCGAAGC CTGGGCGAGG TGCTGGACCT GATCCTGAAA CCGGTGCAGG TGCGCTATGT TGTCGCGGGA AGGCAGATCA TCCTGTCGCG GGCGGAGCCG GACCAGAAAA CGGGTGGCAT AGCGCCCGCA GCGCACCCCG CGTCGGAGCA AATGCGCCCG CAGGAGCGCC GGGTAGAAGG CAAAGTAACC GATGAAGCGG GCGCCGGGCT GCCCGGCGTG AGCGTCGTGG TGAAAGGGAC GCAGGCGGGA ACCGTGACGG ATGTGGACGG GAAATTTGCA ATGGAAATGC CGGAATCGGC TGATTTGCTG GTATTTTCCT TTGTGGGCTA TCTGCCTCAG GAGGTGGAAG TCGGTTCACG GACACAGGTG GACATCGTTT TGAAGCCCGA TACCAAAGCG TTGGAAGAAG TGGTGGTAGT GGGTTATGGC ACTGTCAAAA AACGTGACCT CACCGGCGCC ATCGCGAGTG TGAATGTGGA GCAGACGAAA CTTCAACCCA ATACCAATGC TTCGCAAATA CTGCGGGGAA CCACGGCCGG CGTGCAGGTT ACCGACAATG GCCGTCCGGG CCAGGCGGGG GAAATCCGTA TCCGCGGTAT CAACTCTATT TCCGGAAGCA CCGCCCCGCT CATCGTATTG GATGGCATCA TCTACGCCGG TGGAAGCCTG TCGGACATTA ATCCGAGCGA TATCGAGTCG ATCGACGTGC TCAAAGATGC CAGCTCCACT GCTATTTACG GCTCCCTGGC CGCCAATGGC GTGATCGAAG TGACCACCAA ACGGGGGAAG TCCGGTAAGC CGGTGTTTTC ATTCAACACT TACGTAGGCG CTTCGGATTA TGCTTTTTTA CCCAAACTCC TCAATGCGGA GCAATATCTC GCCGCCCGCA AAGATGCGGA GATCGCCGAC GGCGGACCGG TGCCATTCCA GCCGGTGGAG CTTGAAAACA TCGCCGCAGG AAGGTCAATC AAGCCTTTTG AGGAAATCAG ACAATCGGCT CCGATGTCCA ATTACGAGCT AAGCGTATCC GGGAAAACCG AGCGGACGAG CTATTTCTTT TCCGGCGGCT ATCTCAAAGC CAAGTCGCCG GTAAAAGGCG ACAATTTCAG CCGGATTTCC AGTCGGCTTA ACCTTTCGGT AGATGCGACC GACTGGCTGA AACTGGGCGT CAACTCCGGC TTCACTTCCC GCGACGACTC GGGCGTACGT GCGGACCTCG TCGCTACGAC CTACCTGAGC CCATTTGCCA GCCTTTTTCT GGACGACGGC AAATCGCCCC GACCGTTACC GCAGGATATT GGCCTTGTTG CCAACCCGTT GATCGGCCAT GCCCTGAACC AGCGGAAATC GATTACCAAC GCATTGTTTG CCAATGGTTT CGCCGATGTA CGCATTTGGA ATGGACTTTC CTACAAGCTC AATGCGGCGT ACACCCGTAC GGATTCGAAA GAATTTAAAT TCAACCCATC CTACGAACCG CTGAACCGGC TCGGCTCCGG CTCCAAATAC CATGGTGAGC GGCAAAATAT CACAGTGGAG AACATCATCA GCTACAAGCA GCAGATCACC CCGCGCCAGA GCCTGGACGT GACATTATTG TACGGTGCCT ATGAGCAGAA AAGTGAATCC TCGATGCTTT CGAGCCAGAA CATTTTCAAT GATGCACTGG GCTACAATGC GCTCGAAATC GGGGAGGGGT TCAACATTGA TGCGTCGGCG CTTAAAAACC GGCAGCTTTC GAGCATGGCG CGGCTCGGAT ACTCGGTGGC GGGCAAGTAC CTGGCCACCG TGAGCATCCG GCGCGACGGT TTTTCGGCCT TCGGGGCAGG CAAGAAATTC GGGGTGTTTC CGGCCGTTGC ACTGAGCTGG AATGTGACCG AGGAAGCATT TATGCACGAT TTGAAGGAAA TCAACTTTTT GAAACTGAGG GCTTCCTGGG GGCGGAACGG AAACCGCGGC GTGAAAGAAT ACGCTTCCCT GAGCCAGGTG GAACAGAAAA ACTATGTGTT TGGCGATGGC AGCGCCACGT CTGTCGGATT GAGCCCGAGC AGCCTCGCTA ACCCGAGTCT GGGCTGGGAA ACTTCGGAAA GCACCAACAT CGGGGCCGAC GTGCAGGTAT TTAACAGCCG GATCAGCGCT TCGGTGAATT ACTACTGGAC GCGGACTTAT GACCTGTTGC TCGAACAGGC CATTCCCAAC ACCAACGGAT TTGAGAAGTT TCTGCGGAAT GTAGGCCAGA CAAGAAACCA CGGTCTGGAA ATCGACCTGA AAAGCACCAA CATCGAACGC GGCGGATTTA CCTGGAACAC CAGCCTCGCT TTCTCGTTCA ACCGGAATAG GGTCGTGAAA CTGACCGGCG CCGACGTGAA CAACGACGGC CGCGAGGACG ACGACATTGC CAGCGGCTGG TTTATCGGAC ATCCGCTCAT GAGCAATTAT AGCTACGTTT TTGATGGAAT TTTTCAGGAA GGCGACGACC TGAGCCTTAT TCCGGGAGCT ATGCCGGGCG ATATCCGCTT CAAGGACATT AGCGGCCCCG ATGGCGTGCC CGATGGAAAA ATCACTCCGC AGGACCGCAC TGTGATCAGC AATGCACAGC CGCGGTACAA TCTGGGCATT ACCAACGTGT GGAGCTACAA AGGCCTGAGC CTGTCTGCCG CATTCAACAT CCGCCATGGC GGGTACAGCA GAATGGATAT GCTGAACCCG GGCACAAACT TTTACGACCA GGCCAACTTC CTCGACGTGC CTTACTGGAC GCCCGGCAAC CCGATCGACA CACGGCCGAG GATCAACTAC CGAAACCCGC TCGGATACGG TTTCTACGAA AGCCGCAGCT TTGCCAGGCT GCAAGACGTT TCATTGTCGT ACAACATACC CGATAAATTG TTAAAACCGG TGAAAATCGG CTCGCTGCAA GTGTATGTAA GCGCCAAAAA CCTGGCAACC ATCACGAAAT GGAAAGGATG GGACCCTGAA TTCGGCGGCG GCGGCCGGGG GCCTGGGGAG AATGGGCCTT TGCTCAAAAC CTTCATTGCC GGGCTGAATA TTTCTTTCTA A
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Protein sequence | MKKLAAHYAF KCMRTTVGPL LLVLGFIHLS WARTAAGQEL LNRSISITVQ EKSLKSVLHL IEKQAEIKFS YSPQVVPVQQ RVTLNAENRS LGEVLDLILK PVQVRYVVAG RQIILSRAEP DQKTGGIAPA AHPASEQMRP QERRVEGKVT DEAGAGLPGV SVVVKGTQAG TVTDVDGKFA MEMPESADLL VFSFVGYLPQ EVEVGSRTQV DIVLKPDTKA LEEVVVVGYG TVKKRDLTGA IASVNVEQTK LQPNTNASQI LRGTTAGVQV TDNGRPGQAG EIRIRGINSI SGSTAPLIVL DGIIYAGGSL SDINPSDIES IDVLKDASST AIYGSLAANG VIEVTTKRGK SGKPVFSFNT YVGASDYAFL PKLLNAEQYL AARKDAEIAD GGPVPFQPVE LENIAAGRSI KPFEEIRQSA PMSNYELSVS GKTERTSYFF SGGYLKAKSP VKGDNFSRIS SRLNLSVDAT DWLKLGVNSG FTSRDDSGVR ADLVATTYLS PFASLFLDDG KSPRPLPQDI GLVANPLIGH ALNQRKSITN ALFANGFADV RIWNGLSYKL NAAYTRTDSK EFKFNPSYEP LNRLGSGSKY HGERQNITVE NIISYKQQIT PRQSLDVTLL YGAYEQKSES SMLSSQNIFN DALGYNALEI GEGFNIDASA LKNRQLSSMA RLGYSVAGKY LATVSIRRDG FSAFGAGKKF GVFPAVALSW NVTEEAFMHD LKEINFLKLR ASWGRNGNRG VKEYASLSQV EQKNYVFGDG SATSVGLSPS SLANPSLGWE TSESTNIGAD VQVFNSRISA SVNYYWTRTY DLLLEQAIPN TNGFEKFLRN VGQTRNHGLE IDLKSTNIER GGFTWNTSLA FSFNRNRVVK LTGADVNNDG REDDDIASGW FIGHPLMSNY SYVFDGIFQE GDDLSLIPGA MPGDIRFKDI SGPDGVPDGK ITPQDRTVIS NAQPRYNLGI TNVWSYKGLS LSAAFNIRHG GYSRMDMLNP GTNFYDQANF LDVPYWTPGN PIDTRPRINY RNPLGYGFYE SRSFARLQDV SLSYNIPDKL LKPVKIGSLQ VYVSAKNLAT ITKWKGWDPE FGGGGRGPGE NGPLLKTFIA GLNISF
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