| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_2218 |
|---|
| Symbol | |
|---|
| ID | 8225790 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 2717016 |
|---|
| End bp | 2718716 |
|---|
| Gene Length | 1701 bp |
|---|
| Protein Length | 566 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644930054 |
|---|
| Product | RagB/SusD domain protein |
|---|
| Protein accession | YP_003086605 |
|---|
| Protein GI | 255035984 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.149303 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGAT ACATTTCCTT TTTGCTGACC CTGTGTGCGC TCGGGCTGAC GACCGGTTGC
GAAGAGTCTT ACCTGGAAGA AGTGCCGCTC GACCGTTTCA GTCCCGAAAA CCTGCTCGTG
AACGAAGCGG GGTACGATGC GGCGGTAGTG TCGCTCTACG AAGCTGCCCG GCAGGAACAC
AGTATAGCGT CCAACAATTT CGAATACATG ACCGTAGGCA CGGACCAAAG CCAGTGGGGC
CGTAACGATT CGCGGGGTAA CAAGGATTAC AGCCTGCTGA ACTCGAACCT TGAGGCCACG
GCTATTTACT GGGATTGGGC ATTCAAGCAG ATGATCGTCC GTGCTAACCT CATCCTGGAC
AACATCGACG ATCCTGAACT GAAAATAGGC GATGCGGCCC GCGCCAACAT CAAGGGACAG
GCCTTGTTTT TCAGGGCATA TACCTACAAT TTCCTTGCAA ATGTGTACGG AGGCGTGCCT
GTTGTGAAAG AGCGGATCGA GGAGCCGAGG TTCGATTTCG TGCGCAATAC GCGGATGGAG
GTTTTGGAAT TCGTGGCGCA GGATCTGGAA GCGGCTTCCA CATTGCTGAA TATGGAAGTG
CCCGACGGGA GAATCCCGCG CGCGGCGGCA TTTCACCTGC TGAGCGAGGT TTATATTTCA
CTGGGTATGG AAAAGAAGGA CGAATCGTGG TTCGATAAAT CCATTGCCGC GGCCACAAAG
GTGATCAGCA AGGAAGCCGG TGATTACCAG CTTATGACGC AGCGTTTCGG CAAGGCGGGC
GCAAAGCCCG GGGACGTGTT TTCCGACATT TTTGCCGATG GGCAGATCAA CAGATCGTCG
GGGAACAAAG AAGTAATGTG GGCCTGGCAA TTCGAAAATT TCACGCCAGG CGGCTATTCC
ACTCCCACAC TGGCCAATAT CAGCATCCGC TACTGGGGGC CGGAATATGA CAAGATCCAA
TCGCCCAACG GCACGGCCAA CCTGCCGTCC GACAGCCTCG GGCGCGGCAT CGGCGTCAAT
TCGCCCACCA ATTACATCAA ATACGACATC TGGAAGCTCG ATCCGAATGA TATACGCAAC
TCGGTGCACA ATATCCGCAG GACCTTTTAT TACAACAACG CGGCGGACAA GGAATATTTC
GGCAAACCCA TTGTGGCCAA AAGGGGCGCG GACGGCCAGC TTTACACCAC CAAATCAGAT
GGCTCACTGA CCAAATTCGT GCTTGATACA TTGCGCCAAT ATTATCCCTA TATCCGAAAA
ATCGAGGGTA CGCCCATGGG TAACAACAAC CTGAGCGGCA ATTCGGTGAA GGATTTCAGC
CGGATGCGCG TCGCAGAGAC CTATTTGCTG CGTGCCGAAG CGCATTTTAG AAAAGGCGAC
CTGGCCATGG CCGCCGCGGA CCTGAATATT GTCCGCGCAC GGGCTAATGC AAAGCCGATC
GCCGCCGCCG CCGTGACCGA AGACTTTATC CTCGACGAAC GCTCGCGTGA GCTGATCGTG
GAAGAGCCCC GCCTTCGCAC GCTCATTCGC ATGGGCAGGC TCGTAGACAG GGTGCGCAAG
TACAATTCCA TACCCTCCGT GCCGAACGGA CCGTCGTCGG GAGGCACCAT CCAGGATTTC
AACCGCTACT GGCCTATCCC ACAGAAGGTG ATCGATGCCA ACACCGGTGC CACGTTCGAA
CAGAATCCCG GTTACCCTTG A
|
|---|
| Protein sequence | MKRYISFLLT LCALGLTTGC EESYLEEVPL DRFSPENLLV NEAGYDAAVV SLYEAARQEH
SIASNNFEYM TVGTDQSQWG RNDSRGNKDY SLLNSNLEAT AIYWDWAFKQ MIVRANLILD
NIDDPELKIG DAARANIKGQ ALFFRAYTYN FLANVYGGVP VVKERIEEPR FDFVRNTRME
VLEFVAQDLE AASTLLNMEV PDGRIPRAAA FHLLSEVYIS LGMEKKDESW FDKSIAAATK
VISKEAGDYQ LMTQRFGKAG AKPGDVFSDI FADGQINRSS GNKEVMWAWQ FENFTPGGYS
TPTLANISIR YWGPEYDKIQ SPNGTANLPS DSLGRGIGVN SPTNYIKYDI WKLDPNDIRN
SVHNIRRTFY YNNAADKEYF GKPIVAKRGA DGQLYTTKSD GSLTKFVLDT LRQYYPYIRK
IEGTPMGNNN LSGNSVKDFS RMRVAETYLL RAEAHFRKGD LAMAAADLNI VRARANAKPI
AAAAVTEDFI LDERSRELIV EEPRLRTLIR MGRLVDRVRK YNSIPSVPNG PSSGGTIQDF
NRYWPIPQKV IDANTGATFE QNPGYP
|
|---|
| |