| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_2137 |
|---|
| Symbol | |
|---|
| ID | 8225709 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 2607467 |
|---|
| End bp | 2610619 |
|---|
| Gene Length | 3153 bp |
|---|
| Protein Length | 1050 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644929974 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_003086525 |
|---|
| Protein GI | 255035904 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.341252 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTATGA AACAACTCTT ACGCATCATT CTGGTATGCC TGCTGGTCGC TCCGGCATTG
CATGCTCAGA CGCTGTCCGT GAAGGGCAGG GTGACGGGTG TGAGCGACGC CGACCCGCTG
CCGGGTGTGA GTGTCGTGAT CAAAGGCACG CAACGCGGAA CGACCACCAA TGCCGACGGT
GCGTTCCAGA TCGACGTGCC GGATCAAGCT ACGGTGCTGG TATTCAGTTT TGTAGGTTAC
AAATCCGTAG AGGAAACGGT AGGCGCGCGC ACCGACATCG GCGTGAAGCT CGTGCCGGAA
AACAAATCGC TGGAAGAGGT AGTGGTGGTC GGTTACGGAA CGCAGAGCAA GCGGGCGGTG
ACCGGCGCGG TGATTTCCGT GAATTACGAT AAATTCAAAG ACCGTTCATT CAGTAACGTT
ACCCAGTCGC TGGCCGGAAC GCTCCCCGGG GTAAATATTT CGCAATCGCA GGGTGCACCG
GGCTCATCGC CGGTGATCAA GATCCGCGGG ATCAGTTCCA TTACCGCCGG TACCAATCCG
CTGATCGTGG TGGACGGTGT GCCGCTGGAA AATTTTAACC TGAACCTTAT CAACCCGCAG
GATATCGAGT CGATAGAAGT GCTGAAAGAC GCTTCGTCCG CAGCCATTTA CGGGTCGCGC
GGATCGAGCG GGGTAATCAT TGTGACCACC AAAACGGGCA AGCCCGGCAA GGTGAATGTG
AGCGCCAATG TGGAATATGG CTCGCAAAAA GTGACGCGCC GCGTGAAAAT GATGGACGCG
CAGCAGTTTA TCGAAACTTA CACCGATGCT AAAAACAATG CCTGGACAGC ACAGGGCGGC
AATGCGAGCG ACCCGAACAG CGCCCGCCCG GCCACATTGC GTATCCCGGA TGATTTTACA
CAAAATCCGC AGCAGTTTGG AAAAGGTACG GACTGGCAAG ATGTGATGTT CCGCACGGCA
CCGTCGTTCA ACGCGCAACT GACGGTTACC GGAGGCACCG ACAAGACGCA ATATATGTTT
TCGGGCGCCT ACCTCGACCA AACGGCCGTT CTCGACGCGA ACTACTACAA ACGCCTCGCG
CTTCGATCGA ACCTCAAAAC ACAAATTACC AAAAGGCTCA CCGCGGGCTT GAACATTGGT
ATTACCTCCA TTTTCGACCG CACGGAAGGA ACGCAGGGTA AAAGCGACGT GATCAGTCTC
GGCCTGCAAA GCTCACCGAT TTTCCCGGTT TACAATGAAA ACGGCAACCT CGGTTTCCGC
GATCCCAACT CGACCTGGTT CCGCTTTACG CCCTATGCGG ATATGAACCT CTGGCATCCG
TACTCGCTCA CCCGGGAGGT GGATAAGGGC CGGAAGTCGT TCAATACCCT TGCGACGGGT
TACCTGGAAT ACGAGCTCAT CGACGGCCTG CGGTTCCGCA CCAGCCTCAG CGGCAACTTG
TACAATACCC GCAACCATTT TTATTGGAAC GATAAACAAA AATACGGCTA CTCGGCTGTG
CTCGCGGCGC AGGGCAATGC AAGCGACGCG TACATGTTGA ACTGGCTGAG TGAGAATACG
TTGACCTACG ATAAGAAGCT CGGTGAGCAC TCATTCACCG GTTTGCTGGG TTACACCAGC
CAAAAACAGC GCGACGAAAC GATGTACGTG GCTGCCAACA ACTTCCCGAA CGACCTCGTG
CACACGCTCA ATGCCGGAAC AGTTACCGCA GGGAACACCA CAGCCAGCGA ATGGTCGCTG
CTGTCGTACC TGGCGCGGGT GCAGTATAAT TTCAAAAACC GCTACTTCCT GACGGGAGCG
ATGCGCCGCG ATGGAATGTC GCGCTTTGGC GAGAACAACA AATGGGGCTA TTTTCCTTCT
GTTTCAGCGG GTTGGTTGAT TTCGGATGAG GCATTCATGT CGGGTGTGAC GGCGGTGAAC
AACCTGAAAC TCCGCGCGAG CTATGGCGTG ACGGGTAACA ACCAGATCCC TAACTACGGC
GCGATCAGTT TGCTGGCTGC GGCGCAATAT GTAAATGGTC AGAACCTGGC CAATGGACTG
AAAGTGAACA GCCTGGCAAA TCCTAATCTG AAATGGGAGA AGACCAATCA GTTCAACGTG
GGCGTGGATG TGGGGCTATT TAACAACCGG ATCAACCTTT CGGCGGAATA CTACAACTCG
CTTACCCGTG ACATGCTGCT TTTCGTGCCG GTGCCCGACA TTACCGGATT CTCGACCCAG
CTGACCAATA TCGGTAAAAT GCGCAACCGC GGCGTGGAAT TGAATATTTC TACCAAAAAC
CTCACTGGCG CATTCACATG GACGACGGAT TTCAACTTTT CAAGGAACCG GAACAAAGTG
CTGCAACTCG GCCCGGGCAA CGCGCCGATC CAGTATGTCG ACAACGTGGT GACCGTGCGC
ACGGAAGTGG GCCAGCCTGT TTCGAACTTC TACGGCTACA TTTTCGACGG CGTATTCAAA
AATCAGGCGG AAATCGACGC TTACCCGCAC CATGCCAGCA CCACGCCGGG CGACCCGAAA
GTACGTGACG TGAATGGCGA CGGCAAGATC AGCGATGCCG ACCGCACCAT TCTCGGAAAC
TATCAGCCGA ATTTCACGGC GGGCATTACC AACACCGTTG GCTACAAAGG CTTTGAGCTA
TCGTTCCTGT TCCAGGGCTC GTACGGCGGC GAGATCGCCA ACAACAACGT GCGCTACCTC
GGGACCTGGG ACAATGGACG CAACTTTTTC GAGAGCATGT ATAACTACTG GCGCTCTGAG
AGCAATCCGG GCGATGGCAA GCATTTCAAA CCATCGGTGA ACTACCTTGG GTTGCAAAAG
CAGTTCTCGT CGTACTGGGT GGAAGATGCT TCGTTCCTGC GCCTGCGCAA TGTGCGCGTA
TCGTACGCAA TGCCTCAGAA ATGGGCTGCG AAGCTGAAAA TGAGCAGCGC GCGAATTTAT
GTGAATGCGG AAAACGTGCA TTTGTGGAGC AAATACATCG GCTACGATCC TGAGAACACG
ACTTACGGAA CAACTTCCTA TTCTTCGAGC ATGGAAACTT CCAGCTCGTA CAGCAGTGGC
AATGCACCGG TGCCGGGCGC TTTTCAGGGG GTTGATTATG GATCGTATCC TCTGCCCCGT
GTGATTACTG TTGGGATTAA AGCTGATTTT TAA
|
|---|
| Protein sequence | MFMKQLLRII LVCLLVAPAL HAQTLSVKGR VTGVSDADPL PGVSVVIKGT QRGTTTNADG
AFQIDVPDQA TVLVFSFVGY KSVEETVGAR TDIGVKLVPE NKSLEEVVVV GYGTQSKRAV
TGAVISVNYD KFKDRSFSNV TQSLAGTLPG VNISQSQGAP GSSPVIKIRG ISSITAGTNP
LIVVDGVPLE NFNLNLINPQ DIESIEVLKD ASSAAIYGSR GSSGVIIVTT KTGKPGKVNV
SANVEYGSQK VTRRVKMMDA QQFIETYTDA KNNAWTAQGG NASDPNSARP ATLRIPDDFT
QNPQQFGKGT DWQDVMFRTA PSFNAQLTVT GGTDKTQYMF SGAYLDQTAV LDANYYKRLA
LRSNLKTQIT KRLTAGLNIG ITSIFDRTEG TQGKSDVISL GLQSSPIFPV YNENGNLGFR
DPNSTWFRFT PYADMNLWHP YSLTREVDKG RKSFNTLATG YLEYELIDGL RFRTSLSGNL
YNTRNHFYWN DKQKYGYSAV LAAQGNASDA YMLNWLSENT LTYDKKLGEH SFTGLLGYTS
QKQRDETMYV AANNFPNDLV HTLNAGTVTA GNTTASEWSL LSYLARVQYN FKNRYFLTGA
MRRDGMSRFG ENNKWGYFPS VSAGWLISDE AFMSGVTAVN NLKLRASYGV TGNNQIPNYG
AISLLAAAQY VNGQNLANGL KVNSLANPNL KWEKTNQFNV GVDVGLFNNR INLSAEYYNS
LTRDMLLFVP VPDITGFSTQ LTNIGKMRNR GVELNISTKN LTGAFTWTTD FNFSRNRNKV
LQLGPGNAPI QYVDNVVTVR TEVGQPVSNF YGYIFDGVFK NQAEIDAYPH HASTTPGDPK
VRDVNGDGKI SDADRTILGN YQPNFTAGIT NTVGYKGFEL SFLFQGSYGG EIANNNVRYL
GTWDNGRNFF ESMYNYWRSE SNPGDGKHFK PSVNYLGLQK QFSSYWVEDA SFLRLRNVRV
SYAMPQKWAA KLKMSSARIY VNAENVHLWS KYIGYDPENT TYGTTSYSSS METSSSYSSG
NAPVPGAFQG VDYGSYPLPR VITVGIKADF
|
|---|
| |