Gene Dfer_1937 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_1937 
Symbol 
ID8225508 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp2368696 
End bp2369487 
Gene Length792 bp 
Protein Length263 aa 
Translation table11 
GC content49% 
IMG OID644929775 
Productcarbohydrate-binding family 6 protein 
Protein accessionYP_003086327 
Protein GI255035706 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2133] Glucose/sorbosone dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.214257 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGGCTGC TCGCTTTTCT TCTTGTCCCA GTATTGACAT TTGGACAATT ACCGCAGGGC 
TTCACACAAA AGAAGCTCAC GCAGGACGTT ATCAACGAGG CTACTTGCAT GGCCCATGCC
GCCGACGGCC GGATTTTCGT TGCCGAACGG TCGGGTAGCG TGAAGGTTTT CCAGAATGGT
TTGCTATCAA CCGTTCACCA GGTACAGACA ACGACCGACG CCGAACAAGG ACTGTTGGGG
ATTACTCTGC ATCCTGATTT TGCCGCAAAT GGTAAATGCT ATCTTTTTTA CACGAATCAG
CAGCGTAGCA GGCATTATCT GGATGTGATT GGCATCACGC CTGCAAATAC AGTAAATTCG
GTCACCCGGG TCATGCAGTT CGATTCAATC CTGAATGGAA ATCATAACGG CGGTGCCCTG
CTTTTCAAAG ACGGTTATCT CTATATAGCG ATCGGCGACA GCAACCGTCC CGTGTTTGCA
CCTCAGCTCG ACACGTACAG GGGAAAAATC CTCTGGTTGC TCGACAATGG TGAGCCGGCA
CCCGGCAATC CCTATTACAA TCAACCCGGC GCTTCACGTC AGAGAAGGAG CATTTGGGCA
GTAGGTTTCC GGAATCCGTG GCGAATGAGC CTGGATCCTG TTTCAAAAAA GCTTTTCCTC
ATCGATGTAG GCGAACATTT TGAAGAAATC AACGATATCA CCGCTCCGGC AGCATCAAAA
AACTATGATT ATGGCTGGAA TTGTAAGTAT CCCGAAACGA CAGACAGTTT GAAATTAGAG
ATTAAACCTT AA
 
Protein sequence
MGLLAFLLVP VLTFGQLPQG FTQKKLTQDV INEATCMAHA ADGRIFVAER SGSVKVFQNG 
LLSTVHQVQT TTDAEQGLLG ITLHPDFAAN GKCYLFYTNQ QRSRHYLDVI GITPANTVNS
VTRVMQFDSI LNGNHNGGAL LFKDGYLYIA IGDSNRPVFA PQLDTYRGKI LWLLDNGEPA
PGNPYYNQPG ASRQRRSIWA VGFRNPWRMS LDPVSKKLFL IDVGEHFEEI NDITAPAASK
NYDYGWNCKY PETTDSLKLE IKP