| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1601 |
|---|
| Symbol | |
|---|
| ID | 8225172 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 1929320 |
|---|
| End bp | 1932487 |
|---|
| Gene Length | 3168 bp |
|---|
| Protein Length | 1055 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644929457 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_003086009 |
|---|
| Protein GI | 255035388 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.709185 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAAAG TTTTACTGCT GGTAGCCCTC GCGGTTGCCT GCGTGGTGAA CCTGCCCGGC
CACGCGCAAA ACAGGGCGCA AGTCAGGGGC GTCGTCAAAA GTACCGACGG CGAGCCGCTT
CCCGGTGTGA ATGTCCTCGA AAAAGGAACC TCGAATGGCG CTGTCACAGA CGTTTCGGGC
GCTTACAGCA TTACGCCCGG CGCTGCCGCG AATGCGACTT TGGTATTTTC CTACATTGGC
ATGCAAACGA AGGAAGTAGC AGTGGGCAAC CAGACGGTCA TTGACATTAC CCTCGACTAC
GACCAGAAAA GCCTCAACGA AGTAGTGGTA GTGGGTTATA CTTCTTCCAA AAAAGAGGAC
CTCACGGGCG CCATCGCCGT GGTGGACATG GCGCCTTTGA AAAACATCAG CTCCGGTAAC
CCGATGCAGG CCTTGCAGGG CCGCGTGCCG GGTTTGTACA TTGAAAAAAC CGGCTCGCCC
AATGGTACCA ACTCCCGCAT CCTGATCCGC GGGGCCAACA CACTGGGCAA TACCGATCCG
CTTTACATCA TCGACGGTGT GCCCACAAAA CGCCCGGAGG TTTTCCAGGG GCTGAACCCG
AATTCAATTG AGTCGATTCA GGTGTTGAAA GATGCTTCGG CATCGTCTAT TTACGGTTCG
CGGGCCTCCA ACGGGGTGAT TATTATCACA ACTAAAAACG GCTCGAACAC GAATGGAAAG
ATCAATATCG ATTTCAACAC CAGCATTTCG GCACAATCGG AGAAGTATGC GCGGTTTAAA
ATGCTGAATG CGGTGGATCG AGGCCGGGCA TTGTGGCGGG CGTCGGTGAA CGACGGCGTA
AACCCCGAGG ACGGCTACGG AGCGTTGTAT CAGTTCGACT GGAACAAGGA TTTCAGCAAC
CCGATCCTGA ACGGCGTGAA AGTACAACCG CTCGTGGGCG GCGACGCCAA TATGCCCGCC
GGCGACACCG ACTGGCAGAA GGAAATGTAC AAAACAGGCA TTGTAACCAA TAACGAGCTC
ACAATATCGG GCGGCAATGG CACCTCTTCC CTGCAAATCA ACCTGGGCTA TTACAAAAAC
ACAGGCATGC TGCGCTACAC CGACTACGAC AAATTCAGCG GGCGCATCAA CGGGCTCACC
AGCGCATTCG ACGGCAAGCT GAAAATCGGG GCGAATATGC AGATCGCCTC GTCGAACGAA
ACGCTCGCTT CCACCGACAT CGGCGGCGCG GCCACGCCCG GCCTGGCGGT TACCCTCGCG
CCCACCATTC CGGTGTATGC CAAAGACGGT TCGTGGGGCG GCGCCATCGG CTCGGGCTAC
TCCGACCGAA ACAACCCGCT GCACATGCAG GAGATCAACA AATGGGACAA TGCACACCGG
CTTACGCTGT TCGGGAATGT GTTTGTGGAA ATTCAGCCTC TCAAAAATTT CTTCCTCAAA
ACCAGCCTGG GCGCCGACAA TGCGGCTTTC CGGTTCAAAA ACATCGAACA ATCCTTTGAA
GAAGGCTCAT TCGGCCGTCC CAACAACAGC CTGACGATCG ATCAGAACCG CTACCTGAGC
ATTACCTGGT CGAACACCGC CCGCTATAAC CTCGATTTGG GCAGCCACCA TTTCAAATTC
CTGGCGGGGA TCGAGGCCAT TAAAAACGAT TCCGATTTTG AAATAGCCCG CAAAGAAGGC
TTCGCCGTGC AAACGAAGGA TTATTTCGTT CTCAATGCAG GCACGGGCAA TACCAACGTA
ACCGGCACAG GCTCGGGCAG CAGGCTGCTT TCGCAATTCG CCCGCATCGA CTACGGCTTT
TCGGACCGTT ACCTGGCGGC CGTTACCATT CGCCGCGACG GTTCCTCGCG TTTCGGGTCG
GAGAATGCCT ACGGGATTTT CCCGGCGGCA TCGGTGGGCT GGCGCATTGA TAAGGAGCAG
TTTTTCAAAG GTGTGACCAA AATCAGCAAT CTGAAACTAC GCGCCGGCGT CGGCAGGGTT
GGTAACCAGG AGATCGGCGA CCTCGCGCGG TTCGGGTTGT ACGATACACG TTACGGCGCG
CGGCAATCGC AATTCCCGAA TGGGCATAAC AGCTTTTTCG ACCAGTTTTA CAACATTGGC
ACCGCCTACG ACCTCAATGG CGCCAACACC GGCAACCTGC CTTCCGGCTT CGTGTCCATC
CAGGGTGCCA ATCCGAACCT GAAATGGGAA ACCACCGATG AGGCCAACTT CGGGCTCGAT
TTCGGGCTTT TCGAGGGGAT GATCCAGGGC TCGTTCGACT ATTTTACCCG CAAAACCAGC
GACATTCTCA TTACACCGCC GGTAGCCTCT GCGGTAGGCG AAGGACAGCT GCGCGTACTC
AATGGCGCGG CCAAGTCCAA CAAGGGTTTT GAGTTTTCAG CCGGCTACTA TGCCCGTCCG
AAAGGTGATT TTACCTACAA TATCATGGCC GGCGTGAGCC GCTTCCGTGA CAGGATCACC
GAGCTGCCCG AAGAAGTGCG CGCCGCTTAT CCCGGCAACG CGGTCCAGAC GATCCTCGGT
CACTCCCAGT TCGATTTGTT CGGGTATAAA ACCGATGGCC TTTTCCAAAA TCAGGCCGAA
GTGGACGCCG CTCCCGCACA GGTGGGCGCC GGCCCGGGAC GCATCCGCTA TGTGGATACC
AACGGGGATA AGCGCATCGA CGACCTCGAC CGCGTGTTTT TCGGCACTAC ATTGCCTGCA
TTCGAATACA ATGTGAAAGT GGAAGCATTT TACAAGTCGT TCGACCTGGC CGTTTTCGGG
TCGGGGATCG CCGGGCGCAA GGGTTTCGAC ATTTATACTT TTTACAACAA TTTCGTCCGC
GGCCGCGAAA ATGTAGGCCC GGGTGTGTTC GATGCCTGGT CGCCGACGAA TACCGGCTCC
AAAATCCCCG CATTGTCGCT GTCCGACGCG AACAACGAGA CGCGGTCTTC GGATTATTTC
AATGTCAATA CTTCCTATTT CAAACTGCGC AACGTTCAGC TCGGCTATGC GCTCCCTTCC
GAGCTGGTCC AGAAGATCAA ACTGCAACGT GTGCGGATGT ACCTGATGGC CGAAAACCTG
TTCCTGATCA AATCCAAGCA GTTTAGCGGC CCCGATCCCG AGCGGACGGA CATTAACGCC
ATCCCCATTC CGAGGACATT CACTTTTGGT TTGAACATTT CTTTCTAA
|
|---|
| Protein sequence | MQKVLLLVAL AVACVVNLPG HAQNRAQVRG VVKSTDGEPL PGVNVLEKGT SNGAVTDVSG
AYSITPGAAA NATLVFSYIG MQTKEVAVGN QTVIDITLDY DQKSLNEVVV VGYTSSKKED
LTGAIAVVDM APLKNISSGN PMQALQGRVP GLYIEKTGSP NGTNSRILIR GANTLGNTDP
LYIIDGVPTK RPEVFQGLNP NSIESIQVLK DASASSIYGS RASNGVIIIT TKNGSNTNGK
INIDFNTSIS AQSEKYARFK MLNAVDRGRA LWRASVNDGV NPEDGYGALY QFDWNKDFSN
PILNGVKVQP LVGGDANMPA GDTDWQKEMY KTGIVTNNEL TISGGNGTSS LQINLGYYKN
TGMLRYTDYD KFSGRINGLT SAFDGKLKIG ANMQIASSNE TLASTDIGGA ATPGLAVTLA
PTIPVYAKDG SWGGAIGSGY SDRNNPLHMQ EINKWDNAHR LTLFGNVFVE IQPLKNFFLK
TSLGADNAAF RFKNIEQSFE EGSFGRPNNS LTIDQNRYLS ITWSNTARYN LDLGSHHFKF
LAGIEAIKND SDFEIARKEG FAVQTKDYFV LNAGTGNTNV TGTGSGSRLL SQFARIDYGF
SDRYLAAVTI RRDGSSRFGS ENAYGIFPAA SVGWRIDKEQ FFKGVTKISN LKLRAGVGRV
GNQEIGDLAR FGLYDTRYGA RQSQFPNGHN SFFDQFYNIG TAYDLNGANT GNLPSGFVSI
QGANPNLKWE TTDEANFGLD FGLFEGMIQG SFDYFTRKTS DILITPPVAS AVGEGQLRVL
NGAAKSNKGF EFSAGYYARP KGDFTYNIMA GVSRFRDRIT ELPEEVRAAY PGNAVQTILG
HSQFDLFGYK TDGLFQNQAE VDAAPAQVGA GPGRIRYVDT NGDKRIDDLD RVFFGTTLPA
FEYNVKVEAF YKSFDLAVFG SGIAGRKGFD IYTFYNNFVR GRENVGPGVF DAWSPTNTGS
KIPALSLSDA NNETRSSDYF NVNTSYFKLR NVQLGYALPS ELVQKIKLQR VRMYLMAENL
FLIKSKQFSG PDPERTDINA IPIPRTFTFG LNISF
|
|---|
| |