Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_1584 |
Symbol | |
ID | 8225155 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | - |
Start bp | 1902380 |
End bp | 1905913 |
Gene Length | 3534 bp |
Protein Length | 1177 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 644929440 |
Product | TonB-dependent receptor plug |
Protein accession | YP_003085992 |
Protein GI | 255035371 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.268471 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.21051 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAATAA ACCTTTTGAC CCGCCTTCCG GTGGGCAGGC AGGCGCATTA TGCCGGCCGG ATACTGAGAA CTATGACCAG GATTCTACTT TTGCTCACCA TCACGCTTTC CCACGTTACG GCCGACGGGT TCAGCCAAAA GTTCTCCTTT CATGCCAAAA ATGCCCCGCT GAAAGTCGTC ATGCGGAACA TCGAAAAGCA GACTGGCTAC CTGTTCCTTT ACGACGAGCT CGACCTTCCC CAGGCAAATA ATGTGTCGGT ACGCTTCAAA AACGCGTCTA TCGACGACAT TCTCGCCACC GTTTTCAAAG ACATGCCGCT GTCGTACCGC ATTTTCCAGC GGAACGTTGT TTTGAAAAAA GTAGTGAAAA CACCCCTTCA TGAAACCGGA CTGCCCGCCC GCATTCCGGG CGCGGAACCG GGCATTCAGC TTACCCAGCG GACGATCGAA CCCTTACCGG CGCGGCTCGA CCGCACGCTA CAGGGGAAGG TTACCGACGA AAACGGCAGC CCGTTCCCCG GCGTGAGCAT TGTCATCAAA AACTCGCAGA CAGGCACGGC CACCGACGCA GCCGGGGAGT TCCGCCTCAG CATTCCCGAC GGGGAGCCGG AACCGGTGAT CGTGGTGAGT TTTGTAGGAT ATAAAAACCA GGAGATCGCG GTCGGTAATA GGCTGGAAGT GAATATTGCT ATGGCAGTGG ACACCAAGGC ATTGAACGAC GTGGTGGTGA TCGGCTACGG CACGCAGAAG CAGAGCAGCA TTACCGGCTC GGTGGCGTCG CTGCCGATGA AGAATGTGGC CAATCAGCCG CTTACCAGCC TCGACCAGGC CCTGGGCGGG CAAATTGCAG GTGTGAACGT GGCGCAAACC AAAGGTGCCC CGGGCGGGGG CGTGTCCGTA CGGGTACGCG GCACGGGGTC CATCGGGGCG GGTAACGAGC CATTGTATGT GATCGACGGC TTTCCCGTGT CGGATGGTTT TAACAGTAAT TTAAATCCAC TGGCGTCCAT CAATCCCAAC GACATCGAAT CCATTGAAAT ACTGAAAGAT GCCTCGGCGG CGGCCATTTA CGGCTCCCGC GGCAGTAACG GCGTGGTGCT GGTGACGACG AAGCGCGGCA AGTCGGGGAA ATCGGTTGTG CAGCTGGATA CCTATTATGG ATTTCAGCAG GTGGCCAACA AAATCGACAT GCTCAATGCC CGCGAGTATG CCGAGTTCAA CACCGAAGCC CGCAATAATG CGTGGGTGGA CCGCGGCGGA AAGGCAACCG ATCCCAACAG CGTGCGCCCG GCGGCGCTGC AAATCCCGGA GATGTTTGCC AACCCGGAAA CACTCGGCAA AGGCACCGAC TGGCAGGATG AGGTTTTCCG CACGGCGCCG ATCCAGAACT ATCAGTTGTC GCTGTCGGGC GGGAATGATA AAACGACATT CTTCACTTCG GGGGCTTATT TCAAACAGGA CGGCATTGTG ATGAACACGG GCTTCGAGCG GTATTCGGCG CGGGTGAACC TCGACCATAA GGCATCGCGC CATGTAACCG TGGGCATGAA CCTCTCGCCC TCGTTCGCTT CGAGCCGGCT GCTGCCCGTG GAAGACCAGG TTTTTTCGGG CGGTATATTG GGTTCCGCAT TGTCGCTGCC GCCTACCGTG CCGGTTTACA ATCCCGACGG ATCGTTCACG ACATTGCTCG GGCCATCACC GTATAACATC GGGGTGATCG ACAACCCCGT AGCCATCGCC AGCAAAATCA AGAACAAGCG GACCGTTTTC AGAACCCTTG GAAATGTGTA CGCCGAAGCC ACCATTATCA ACGGCCTCAA ATTCAGGACC TCTTTCGGGA TCGATTACTC CGACTCCCGC GACAATGCCT ATTATCCGTC CGATTTGGGC TGGAATGGAG TGCCGGCGCC GGTACAGGCC AGGGCGTCAG CTTCAACGGG CCGCGACTTG AACTGGCTCA ATGAGAACAT TTTGACCTAC AAAAAGACAT TCGGCGAAAA GCACGAGCTC GACCTGCTTG CCGGATTTAC CGCTCAAAAA GCCAGGTACG AAGCGGCTTC GCTGAATGCC ACCAACTTCC CGACCGACCT CGTGCCGACG CTGAATGCAG GCCAGGTTAC CAGCGGCGGC ACCGCCGTTT CGGAATGGTC GCTGCTTTCG ATGCTGGCGC GGGCCAACTA CACCTATGCA GGTAAATACC TGTTTTCGGC TACCATGCGC CGCGACGGGT CGTCACGCTT CGGCGCGCGC AACAAATGGG GCACGTTCCC GTCGGCTTCG GTGGGCTGGT ACATTTCGGA AGAGCATTTC ATGAAATCGC AGCACGTGGT GAGCGATCTG AAACTGCGGG CGAGCTACGG GCTGGCGGGT AACAATACCA TCGGTAACTA CAACCACATC GGGCTCCTCA GCAACCGCCG TTACAGCTTC GGCGAGGGCG CGGGGGCGCT GGCTTACGGG CTCTACCCGG GATCGATCAG CAATGAGCAG CTGGGCTGGG AAATGATGCA CCAGTTCGAT ATCGGCGTCG ATTTCTCGTT GCTGCGCAGC CGGCTGAGCT TTACCATTGA TTTTTACAAC AAAAACACCA CCGACCTGCT CCTGAACGTG CCCGTACCGG CGTCTACCGG CTATGAAACC GCCTTGCAGA ACATCGGAAA GCTCAATAAC CGGGGCTGGG AGTTCAGTGT CAATTCGCGG AATTTCACCG GCGCATTCAA ATGGTCGACG GCGTTCAATA TTTCCTTTAA CCGCAATAAA GTAATGAAGC TGGGGCCGTC CGGCAACCCG ATTATCTCCA AAAGCCCGTC TTTCAGTCCC AACACCCACA TTACCAGGAT CGGCTCGCCC ATCGGGAGTT TCTGGGGTTA TGAGGCGATC GGCGTTTACC AGTCGCAGGA AGATGTGGAT AGCAGCCCGA GGGTAGGAGG TAACACCGGA TCGCGGCCGG GCGACCTGAA ATTCAGGGAT ATAGACGGCG ATGGCGCCAT TACGCCCAGC GACGTCACGA TCATCGGCGA CAATGCGCCC GATTTCTTTT ACGGCATCAC CAACAATTTC TCCTATGGCC CGTTCAGCCT CAGCATTCTC GGCGACGGCG TGCAGGGTAT CCAGCTGCTG AACGGCTCGC GTCGGAATAT CGGACTGGTG AATGGCAGTT ACAGCCGCAA GGACGTCCTT GGCCGCTGGC AGTCGCCCGA GCAGCCGGGT GATGGCCGCA CGCCGCGTGC CAATGTGGCG CCTACCGGCG GCAACGTGAG CTACGTGTCG AGCCTGCTCG TGGAAAACGC ATCTTTTTTC AGGATCAGGA ACATCAACCT GCGGTATAGC CTGCCCGAAA AACTGGCGAA GGCGGTTTGT CTTCAGAATG CAAGCGTGAG CCTGTCGGTA CAGAATGCGT TCACATTCAC GAAGTACCGG GGCTACAACC CCGAGCAAAG CCTGAACGGC AGCAGCTCGC TCACGCCCGG CGTCGATTTC AACGGCTATC CGCTGGCGCG CACATTCACC CTTGGTCTGA ACCTGACATT ATAA
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Protein sequence | MKINLLTRLP VGRQAHYAGR ILRTMTRILL LLTITLSHVT ADGFSQKFSF HAKNAPLKVV MRNIEKQTGY LFLYDELDLP QANNVSVRFK NASIDDILAT VFKDMPLSYR IFQRNVVLKK VVKTPLHETG LPARIPGAEP GIQLTQRTIE PLPARLDRTL QGKVTDENGS PFPGVSIVIK NSQTGTATDA AGEFRLSIPD GEPEPVIVVS FVGYKNQEIA VGNRLEVNIA MAVDTKALND VVVIGYGTQK QSSITGSVAS LPMKNVANQP LTSLDQALGG QIAGVNVAQT KGAPGGGVSV RVRGTGSIGA GNEPLYVIDG FPVSDGFNSN LNPLASINPN DIESIEILKD ASAAAIYGSR GSNGVVLVTT KRGKSGKSVV QLDTYYGFQQ VANKIDMLNA REYAEFNTEA RNNAWVDRGG KATDPNSVRP AALQIPEMFA NPETLGKGTD WQDEVFRTAP IQNYQLSLSG GNDKTTFFTS GAYFKQDGIV MNTGFERYSA RVNLDHKASR HVTVGMNLSP SFASSRLLPV EDQVFSGGIL GSALSLPPTV PVYNPDGSFT TLLGPSPYNI GVIDNPVAIA SKIKNKRTVF RTLGNVYAEA TIINGLKFRT SFGIDYSDSR DNAYYPSDLG WNGVPAPVQA RASASTGRDL NWLNENILTY KKTFGEKHEL DLLAGFTAQK ARYEAASLNA TNFPTDLVPT LNAGQVTSGG TAVSEWSLLS MLARANYTYA GKYLFSATMR RDGSSRFGAR NKWGTFPSAS VGWYISEEHF MKSQHVVSDL KLRASYGLAG NNTIGNYNHI GLLSNRRYSF GEGAGALAYG LYPGSISNEQ LGWEMMHQFD IGVDFSLLRS RLSFTIDFYN KNTTDLLLNV PVPASTGYET ALQNIGKLNN RGWEFSVNSR NFTGAFKWST AFNISFNRNK VMKLGPSGNP IISKSPSFSP NTHITRIGSP IGSFWGYEAI GVYQSQEDVD SSPRVGGNTG SRPGDLKFRD IDGDGAITPS DVTIIGDNAP DFFYGITNNF SYGPFSLSIL GDGVQGIQLL NGSRRNIGLV NGSYSRKDVL GRWQSPEQPG DGRTPRANVA PTGGNVSYVS SLLVENASFF RIRNINLRYS LPEKLAKAVC LQNASVSLSV QNAFTFTKYR GYNPEQSLNG SSSLTPGVDF NGYPLARTFT LGLNLTL
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