Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_1556 |
Symbol | |
ID | 8225127 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | + |
Start bp | 1857742 |
End bp | 1859511 |
Gene Length | 1770 bp |
Protein Length | 589 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 644929414 |
Product | RagB/SusD domain protein |
Protein accession | YP_003085966 |
Protein GI | 255035345 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.31558 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAGACAA ATAAAATACT TAGCTATACC CTTGCCGCGA TGCTGCTCGC CACGGCAAGC TCCTGCGACC TGAACGAGGT GCCGGTGGAT ACCGCTACCA ACGAAGCGGT GTTCAGCTCG GAAGCGGGCC TGGAACTTTA CGCCAATTCA TTTTATGACC TGCTCCCCAA CACGGACGTG GGCGTGTTCC AGATTGACGA CAACTCCGAC CTCGTGGCCC GCAACGGCGT GGACGATTAC CTCGCTGTGA ATGCATTGAG CCCCATTACC AGCAGTGGAT GGACCTGGAC GCAGCTACGT AATATCAATT ATTACATTGA AAATACGCAG AAAAGCACCG TCGCTACCAA AAACCATTAC CTCGGCGTGG CGCGCTTTTT CCGGGCGTTG TTTTATTTTG AGAAGGTCAA AAGATTCGGT GATGTGCCCT GGATCGAAGA AACCATTGAT GTGAACGACG ATGCGGCGCT TTACGGCGCG CGCATGAACC GCTACGAGGT GATGGACAAA GTGCTGGCCG ACCTGAACTT CGCGATCGAG AACATTACAC TCACCTCCGA CCCGTCGGTT ACGCGCATTA CCAAAAATGT AGCCCGCGCC TACAAGACCC GCATTGCCTT GTTCGAGGCG TCGTGGCGCA AGTACCATAC CGAAGACAAC AAGCAGTCGA CGGCCGATGC GTGGTATGAA GAGGTAGTTA AAGAAGCGAA TGCGATCAAT GGTTACACGC TGCATTCGAC GGTGGCCGAC AAGTCGTACC GCGAGCTGTT CCTTGCCAAA ACGGCTTTCG CCGACGAATC GATCCTTTCC GTAGCGCTGA GCGCCAGCTT GCAGGTGTAC AGCTCGGCCA ACCGCCGGTT TATCAGCCCT ACTTATGGTA ACCGCCCAAG CCTCACGCGC CGTTTTATCA ACACCTACCT TAACCTGGAT GGAACGCCAT TCACCAGCAA GGCAGGCTAC GAAACGACGC CGTTTGTGGA AGAGGTCAAA AACCGCGATC TGCGCCTGAA ACAAACCATC CGCACGGGCG ATTACACCCG CACGGAAAAC GGCCTGCCCG TGATCGCGCC GCCGAATTTC AGCCAGACCA ACACCGGCTA CCAGCCCATC AAATGGTGCT ACGACGAACG TTTCCCGTTC GACGACGAAA GCCGCAACGA CAATGCGCAC ATCGTGATGC GCTATGCCGA AGTGCTGCTC AACAAAGCCG AAGCATTGGC CGAGCTCGGC AAAATGACCG CCGAAGACTG GACTACGACC ATTGGTGCCC TCAGAAAGCG TGCAGGCATT ACCGGCGCCA CGCTCACGAC GCTGCCTACC AAGGCCGATC CCTACATGGT ATCGTTCTTC GGCGGCAAAT TCAGCAACCC GGTGCTGCTT GAAGTACTGC GCGACAGAGG TACGGAAATG GTATTCGAAG GCCTGCGCCC CGACGACCTG AGAAGATGGA AGCTCGGCAA GTTGTTCCAG GACGCGCCGA TGAACGGCAT GTACGTGCCC GCCCTCGGCG AATACGACCT GAACGGCGAC GGCAAAAACG ATGTGTACTT TTACCAGGGC ACCAAACCCA CGTCGACCAC GCCGGGCATC GCATTCGTGG ACGTAACCCC GTCCACAGCC GTTGGCCGCG TTCAGCTTTC GAAAGGCACT TCCGGAGAGG TTATATGGAA TCCCGGCCAA CGCGAATGGG CGGATAAGAA ATACCTCTAC CCCATTCCCG AGGCCGACCG GATCAGAAAC CCGGCCCTGG GCCAGAACCC GGGCTGGTAA
|
Protein sequence | MKTNKILSYT LAAMLLATAS SCDLNEVPVD TATNEAVFSS EAGLELYANS FYDLLPNTDV GVFQIDDNSD LVARNGVDDY LAVNALSPIT SSGWTWTQLR NINYYIENTQ KSTVATKNHY LGVARFFRAL FYFEKVKRFG DVPWIEETID VNDDAALYGA RMNRYEVMDK VLADLNFAIE NITLTSDPSV TRITKNVARA YKTRIALFEA SWRKYHTEDN KQSTADAWYE EVVKEANAIN GYTLHSTVAD KSYRELFLAK TAFADESILS VALSASLQVY SSANRRFISP TYGNRPSLTR RFINTYLNLD GTPFTSKAGY ETTPFVEEVK NRDLRLKQTI RTGDYTRTEN GLPVIAPPNF SQTNTGYQPI KWCYDERFPF DDESRNDNAH IVMRYAEVLL NKAEALAELG KMTAEDWTTT IGALRKRAGI TGATLTTLPT KADPYMVSFF GGKFSNPVLL EVLRDRGTEM VFEGLRPDDL RRWKLGKLFQ DAPMNGMYVP ALGEYDLNGD GKNDVYFYQG TKPTSTTPGI AFVDVTPSTA VGRVQLSKGT SGEVIWNPGQ REWADKKYLY PIPEADRIRN PALGQNPGW
|
| |