Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_1503 |
Symbol | |
ID | 8225074 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | - |
Start bp | 1796668 |
End bp | 1800216 |
Gene Length | 3549 bp |
Protein Length | 1182 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 644929361 |
Product | putative phytochrome sensor protein |
Protein accession | YP_003085913 |
Protein GI | 255035292 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2972] Predicted signal transduction protein with a C-terminal ATPase domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.531436 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGTCTCT GGCTGTACAG CGGAGGCCTT CGGGCGCAGA CGTTATTCCA GAACATCCGC TGGCAGGATG GCCTTAGTGC AAAGCAAATC CGCTGTTTGT ACAAAGATTC ATCCGGCTTT TTGTGGATTG GCACGTCTGC CGGCCTCGAC CGTTACGACG GTGCCGTCGT CCGGCGTTTT CATGATGCGG CGGGAGGTCA GAAGCATTAT GTGAATGCGA TTTGGCCGTT CGGCGGAGAG GACACGCTGA TGATCGGCCT GCGGCGCGGT GTGCTTTTGT TTGATAAAAA AAACGGCCGC TTTTCGCATG ATCCCCGGTT TCGAGAGCTG GCAAATCGCT ACATCGTCAG CATCCGTCAG GATGGCCGGC AGCGCATCTG GATCGGGACC TCCGATGGCC TGTTTGTTTA CCAAAATAAT AAACTAGGTC CTGTCACCGA TCTGTTTCCC GACGCCCGCA AATTCGATTT CCGTGGCTTT GAGCTAAAAG TGATGGTGTA CGATACGCTG AGACGCGGGA TGTGGGTAGG AGGTAACCGG CCGCTGTTTA TCGATTGCAA AGCCGACCGC GTATACTTCA AAGGAAACAA TGTCCTGCGC AGCCCGCTGC TCGAATCGGC GAAAGTGCAC GCGATCGCCG TCGACCGTAC GGGAAATGTG TGGTATGGCT GCGATACCGA CCCGTCGCTG AACTACTGGA ACTACCGCAC CGGCAAAGTG GACACGCATT ATGCGCTGGA TGGCAAGCTG ATTGGTGAGG GCTGCAATTT CATTTTTATG GACCGGCAGG ACCGGCTGTG GGTCTCTACC TGGCTCTTTG CGGCATTTGT GAAAGAACCG GGGCAGCCTT TCCGCAAAAT CGAATACAGC CAGGACCAGG CCTACACCAT CGCTTACGGG CATTTTCGGG ACGCGATTTC CGACGCGCAA GGCAATGTAT GGCTCGGGAC GATCAATGGC GTGAGCAAAA CGCTCCCCAA AAATCCCATC GAGGCGATTT ACAAACTGCC CAGCTTTCCG TTTTTTCTCG AAACAAACTT TGCCCATGCC AACTCCATCA CCGTCGACGG CAGCATGATC GTGGCCTGCA AGGAAGATGG CGTTGTGTTC TACAACACGG CAGATCGCAA ATACCAGAAA TTCGTGACGC CCAGCAAACG GCTGCGCAAT AACCGGTTCG TTATGACCGC CAAAGTGGAC GATACCTGGT GGTTTGCCGG TTTCGACGGT ATTTACTCAC TCTCGCCCGG AGAAACCGTG TTGCGGCGCT TCAACCAGAC GAAGCCCGGC CTGGCATCCT ACGAAGCACC CTTTGTTTTT TTGGATAAAC AAAAAAATAT ATGGTTCCAG ATTGACGGCG ACGCCATTTA CCGCTACCAG CCGGCTACTA AAACGACCCT GCGGTTTGAC GGTACCGACC CGCGTTACGG CCTTTTCGCA TTCGCCGATG CACAGGCTTT TATACCGCTT TCAAATGGCG ACATTCTGTT TAGCGTGCAG GGCAAAGGAA TGCTGCGCTA TGATCACCAA CGCGAGCATT TCTCCATGCT GCCCGCGCCC GACATTGCCG AGGAGTACAT TTATGAAATG CGCCAAAGCA AAACCGGCGA AATATGGGCC GCGGCGACTT CCAGCGGCCT GCTCAAAATC GATGCGGGCG GGAAGGTGAT CCGGAGTATC ACGACGAAGG ATGGCTTGCC GTACGACCAG ATTTCGTCAC TGGGCATTGA CGACAAGGGC GTAATCTGGT GCGCGAGCCG CGAAGGATTG GCAACGTATG ATCCCGCGAG CAACAATGTG AGCAAGGTGG AGCTCGATTT GGGCAAGACC TTGCAGGATT ACTGGAATTA CGTGACGCTG GCCGAGGGCA AAATTTACGC GGTCATGCTC GACCACGTCG TGGTAATCAA CCCGCGGCAT TTCGCTTCGG TGCCGGTGCA GAAGCCTCCG GCCATTACCT CCGTGAAGAT ATTCGGGCAG GAGCGGTTGC AGGACCTGGA CGGCGGGCCG CTGGAACTGA ACCCGGACGA ATCGTTCGTC GCATTCCAGT ACGCCTCGCT CAGTCACCGC GACATTCCGT CGCTGCAATA CAGCTACCAG CTCGTGGGCC TCGACAACGA CTGGGTGATG GCGGGCCGCA ACATCACGGC GTCGTATACC AACCTCCTTC CCGGCGAATA TGTTTTCAAA GTGAGAAGTA CCGATGAAAA TGGCCGCTGG ATGCGCACCG CGCAAACGCT GAGCCTGAAA GTATTGCCGC ATTGGTGGCA AACCTGGTGG TTTTTCGTTG TGTGCGCCCT TGCGACAGGC GGTTCGCTCT ACTGGTTTGC CCGGATTTAT ACTAAAAGGC GGCATAAGAA GGATCTCGAC GACACGATCG AGTACTTTGC CAACAGCGTT TACGGGGATA ACTCGGTGAA CGAAATTTGC TGGGACATTG CCCGCAATTG CATTTCAAAG CTGCATTTCG AGGATTGCGT CGTGTATTTG CTCGATAAGG AAACCAACAC ACTCATCCAG AAAGCCGCCT ACGGTCCCAA AAGTCCGAAG GAATATGAAA TCCTGAACCC GATCGAAATA CCGGTCGGCG AGGGGATCGT GGGCACGGCG GCCGCCACCG GGTTGCCGCA AATCATCGGC GACACGTCCA AAGACCCGCG TTATATCATC GACGACCAGG CGCGGTTTTC GGAACTCGCC GTGCCCATTC TGCACGAGGG CCAGGTGATC GGCGTGATCG ACTCGGAGCA TCCCAGCAAG AATTTTTATA ACCACGATCA CGTCCGTGCG ATTTCCACGA TCGCGGCCAT CAGCGCCAAC AAAATCACCG AGGCTATGGC CCGCGCGCAG GCGGAAAGGC AGGAGATTAT GCTGCTTCGC ATTAATAAAA TGCTGGCGGA GAGTCAGCTA ATGGCCCTGC GTGCGCAGAT GAACCCGCAT TTTATCTTTA ATTGCCTGAA TAGCATACAG GAATGCATCG TCACCCAGAA ATACACCGAA GCGAGCAAGT ACCTGAATAA ATTCGCCAAG CTGTTCAGGC TGGTGCTCAA CAACTCGGGC AGGAACCTCG TCACGATCGC CGAGGAGCGC GACGTGCTGG AACTTTACCT CGAACTGGAA CTGATGCGTT TCGGACAGGG ATTTACCTAT TCCATTGAAA TAGATCCCGA GCTGGAAGAC GATTATGTGC GCCTGCCGTC CATGCTGCTG CAACCGTTCG TGGAAAACGG GCTGTGGCAC GGGCTCATGC ATAAGCAGGG CGACCGGCAC ATGCGGATCA GTTTTTTCCT GACCGGCCCC GAACAATTCG CCTGCGAAAT CGAGGACAAC GGCATTGGGA GGAAAAAATC GGCAGAACTA CGCCAGAATT CCTCGCGTAC ACGGGAACAC GAGTCGCGCG GGATACGTAT CTGTGAAGAC CGGATCGACG TGCTGGCGCG GCAGGGGAAC CACGCGCAGA TGGAGGTGAC AGACCTTTAC GACGACGCCG GCAACCCCAC CGGAACGCTT GTCAGAATAG AATTATCCAC CTATTTATAT CAAACCTAG
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Protein sequence | MGLWLYSGGL RAQTLFQNIR WQDGLSAKQI RCLYKDSSGF LWIGTSAGLD RYDGAVVRRF HDAAGGQKHY VNAIWPFGGE DTLMIGLRRG VLLFDKKNGR FSHDPRFREL ANRYIVSIRQ DGRQRIWIGT SDGLFVYQNN KLGPVTDLFP DARKFDFRGF ELKVMVYDTL RRGMWVGGNR PLFIDCKADR VYFKGNNVLR SPLLESAKVH AIAVDRTGNV WYGCDTDPSL NYWNYRTGKV DTHYALDGKL IGEGCNFIFM DRQDRLWVST WLFAAFVKEP GQPFRKIEYS QDQAYTIAYG HFRDAISDAQ GNVWLGTING VSKTLPKNPI EAIYKLPSFP FFLETNFAHA NSITVDGSMI VACKEDGVVF YNTADRKYQK FVTPSKRLRN NRFVMTAKVD DTWWFAGFDG IYSLSPGETV LRRFNQTKPG LASYEAPFVF LDKQKNIWFQ IDGDAIYRYQ PATKTTLRFD GTDPRYGLFA FADAQAFIPL SNGDILFSVQ GKGMLRYDHQ REHFSMLPAP DIAEEYIYEM RQSKTGEIWA AATSSGLLKI DAGGKVIRSI TTKDGLPYDQ ISSLGIDDKG VIWCASREGL ATYDPASNNV SKVELDLGKT LQDYWNYVTL AEGKIYAVML DHVVVINPRH FASVPVQKPP AITSVKIFGQ ERLQDLDGGP LELNPDESFV AFQYASLSHR DIPSLQYSYQ LVGLDNDWVM AGRNITASYT NLLPGEYVFK VRSTDENGRW MRTAQTLSLK VLPHWWQTWW FFVVCALATG GSLYWFARIY TKRRHKKDLD DTIEYFANSV YGDNSVNEIC WDIARNCISK LHFEDCVVYL LDKETNTLIQ KAAYGPKSPK EYEILNPIEI PVGEGIVGTA AATGLPQIIG DTSKDPRYII DDQARFSELA VPILHEGQVI GVIDSEHPSK NFYNHDHVRA ISTIAAISAN KITEAMARAQ AERQEIMLLR INKMLAESQL MALRAQMNPH FIFNCLNSIQ ECIVTQKYTE ASKYLNKFAK LFRLVLNNSG RNLVTIAEER DVLELYLELE LMRFGQGFTY SIEIDPELED DYVRLPSMLL QPFVENGLWH GLMHKQGDRH MRISFFLTGP EQFACEIEDN GIGRKKSAEL RQNSSRTREH ESRGIRICED RIDVLARQGN HAQMEVTDLY DDAGNPTGTL VRIELSTYLY QT
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