| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1497 |
|---|
| Symbol | |
|---|
| ID | 8225068 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 1787067 |
|---|
| End bp | 1790375 |
|---|
| Gene Length | 3309 bp |
|---|
| Protein Length | 1102 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644929356 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_003085908 |
|---|
| Protein GI | 255035287 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0349817 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.348136 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA CAGAACCTTT ACTTTTTAGC CTTACCGGTT ACAAGGGCAA AAATTCTACC
CGCAAACTGC TATTATGGTT CGTGGTGGTT ACCCTGCTCG CCTGTCAGTC GGCATTGGCG
ATCGATTTTC AGCAGGAAGT AATGTCGCGG CTGGTGACGC TCAAAATCCG CAATCAGCGG
TTTGAAAAAG TCATCAACAG CATCGAAAAA CAGACCAAAG CCCGCATCGT GTACAGTTCC
GAGCGCGTGA ATGTGGCCCG GACGGTGAGT GTGGAGGTCA ATAATGTGCG CCTGGATGCC
GTTTTGGACG AAATCCTCTC CCCTTTGAAC CTCACCTACC GCGTGGTAGG CGGGCAGATC
GTCCTGGAAA ATGCGGCGCG CGAGGAATCA ATGGCCCCGC AGAAAAGCCA GGCCGTCGAC
CGCACCATTT CCGGCGTACT GACCGATGAA AAGAATGCCG TACTGCCGGG CGTGAGCGTG
GTGCTGAAAG GGACCAACCG CGGAACTACC AGCGACGGCG AGGGCAAATT CAGCCTCATT
GTGCCCGACG ACCCTTCGGC CATTCTCACG TTTTCGTTCG TAGGTTACCA GAGCCAGGAC
GTGGTGCTGG GCGCGCAGAC CGCATTTAAT GTATCCCTGA AACCGGATAT TGGTGCCTTG
GAAGAGGTGG TGGTGATCGG CTATGGCGCC GTGCGCAAGC GTGACCTCAC CGGCTCGGTG
GTGCAGCTCA AAAGCGAGCA GCTGAAAGAA GTGCCTTCCA ACAACGTCCT CGACGCCGTA
CAGGGCAAGA TCGCCGGTGC GGACATTACC CGCAGCAGCG GCCAGGCGGG CGCGGGCGTG
AACATTACCA TTCGTGGTAA CCGTTCGATA GGTGGAAACA ACTCCCCGCT CATTATCGTC
GACGGCGTGC AGTACGGAGA CCTGGCGGAC ATCAACTCGA ACGACATCGA ATCCATGGAA
GTGCTGAAAG ATGCGTCCTC GATTGCGATC TACGGCTCAC GCGGTGCGAA CGGCGTTATT
TTGATTACGA CCAAAAAAGG AAGAAGCGGT CGTCCGGACA TTTCTTTCAA CTCCTACGCG
GGTGTTTCGC AGGTGACCAT GTATCCCCGC GCGATGAATA TCACCGAATT CCGCGATTTC
AAACGCGAAG CCTGGCGTGC CGCGGGCGTG TGGAATAGCC CTGCCGACGA TCCGGCGATT
TTCACCAACG TAGCCGAATA CGACGCATTG CAAAAAGGGA CCTGGACGGA TTATCAGAAA
GAACTCATTC ACCCGGGCTT TCAGCAGAAC TACCAGCTGG GCTTCCGGGG AGGCTCGGAA
AAGCTGAAAT CCTACGTTTC AGTGGATTAT TTCAATGAAA AAGGCGTGCT TAAAATGGAC
GAAATGAAGC GCTACACCGC GCGCCTCAAC GTGGATTACA CGCTTACCGA CTGGATGAAG
ATCGGGTTGC AAAGCCAGCT CACCTACTAC AACCAGAGCG TCCGCCGCGA CCCCCTGAAC
CAGGCCAACA AAATCAGCCC GCTGGGCTCG CTCTATGACG AAAACGGCAA TTTCAACTTC
ATCATGCTCG ACGGACAAAC TGCCAACCCG CTTTCGGACG AGCAGCCCGG CGTATTTAAC
AACAATATTC TCACAACCCG CACGCTCACA AACGGTTATG TAGAAATTAC ACCATTGAAA
GGACTAACAT TCCGCAGCAC ATTGGGCGCC AACCTGTCCA GCTCGCGCAA CGGGGCATAT
TCCTCACCGA AGTCCATCGA CCGCTCGCTG ACAGGCAAAT CCCTGGCTAC TTATAATGTA
TCCAACGGCC GTACCATTAA CTGGGAGAAC GTGCTCACTT ACCAAAAGGT ATTTGAACAA
CATAGCTTTA CTTTCACGGG AATCGGTAGC TCGCTCGCGA CGGTTTCGGA CAATGCGTCG
GCATCGGGGG TAAACCAGCT GATTCCCTCG CAGCTCTTTT ACTCCCTCGG CAGCGCTACG
GAAGAGATTA AAATCAATTC GGCCTATTCC AAAAACAACC TCGTTTCCTT TGCAGCGCGG
GTGAATTATG GCTTTAAGGA GCGGTACTTG CTCACGCTGA CAGCACGGAA GGACGGCTCG
TCCAAACTCG CGCCGGGCAA CAAATGGACA TTCTTCCCTT CGGCGGCATT CGCATGGCGG
ATCATCGACG AGGGTTTTAT GAAAAATGTA AAGAAACTCA GCGATCTGAA ACTGCGTGTG
AGCTACGGTA TCGCGGGTAA TGACCCATCC GGCCCTTATG CGACGCAAAC CACCCTCACG
CGCATTGCAT TCGGATTCGA CGAAGTGGCT TATCCGGCCT ACACTTTCTC CCGGAATGTC
GGCAATGCGG CCCTGGGCTG GGAGCTTTCG GCGACGCAAA ACCTGGGTCT TGACTTCGGG
CTGTTCGATG GCCGCATTAA TGGTTCGATC GACTACTACG ACACCCGCAC GTCCGACCTG
CTGCTCGATC GCGGCCTGCC GCCAACTACC GGCGTAACCA CCGTGAAACA GAATATCGGT
AAAACCCGCA ACCGCGGAAT CGAGGTCGTA TTGGGGACCA CCAATGTGCG CACCCGCGAT
TTTACCTGGA ATACCAACCT CACATTTACC AAAAACAAAG AAGAGATCAC CGAACTCGTA
ACGGAGGGCA ACGACATTGG CAACGGCTGG TTCATCGGCA GCCCGATCAG CGTTTTCTAC
GATTATGAAA AACTGGGAAT CTGGCAGACA TCGGAAGCGG AACAGGCGAA AGCAATGTCG
CCCACGCAGC TGCCCGGTGA GATTAAGGTA AAAGACCAGA ATGGCGACGG CAAGATCGAC
GCCGTGAACG ACCGCGTGAT CCTCGGCACC CCGCGCCCGA AATGGAGCGG CGGCCTGGAC
AATACCATCA AGTTCAAAGG GTTTGACCTG AATTTCATGA TTTACGCAAG GATAGGATCG
ATGATCAACT CCGATCGCTA CGCGCGCTTC GACCAGCAGG GTGTGGGCAA CAGCACCGCC
GGACTGGATT ACTGGACGCC GGAGAACCCG ACCAACGACT ACCCCCGACC GAACAAGAAC
GCGGGCCTCA AATACCTGTC GACGCTCGGT TATCGCGACG CCTCCTACGC ACGTATCCGT
AACGTGACGC TCGCGTACAA CCTGCCGGTA GACAAGTTCA ACTGGAAAAT CATCCGCGGC
CTGCGCATTT ATGCCACCGC GAAAAACCTG GCGACATTCA CCAAGCTCGA TTACGACCCC
GAGCGGGGCG GATCGGAGAA CTTCCCGATG ACGAAACTGT TCGTTTTTGG TCTGAATGTA
AACCTTTAA
|
|---|
| Protein sequence | MKKTEPLLFS LTGYKGKNST RKLLLWFVVV TLLACQSALA IDFQQEVMSR LVTLKIRNQR
FEKVINSIEK QTKARIVYSS ERVNVARTVS VEVNNVRLDA VLDEILSPLN LTYRVVGGQI
VLENAAREES MAPQKSQAVD RTISGVLTDE KNAVLPGVSV VLKGTNRGTT SDGEGKFSLI
VPDDPSAILT FSFVGYQSQD VVLGAQTAFN VSLKPDIGAL EEVVVIGYGA VRKRDLTGSV
VQLKSEQLKE VPSNNVLDAV QGKIAGADIT RSSGQAGAGV NITIRGNRSI GGNNSPLIIV
DGVQYGDLAD INSNDIESME VLKDASSIAI YGSRGANGVI LITTKKGRSG RPDISFNSYA
GVSQVTMYPR AMNITEFRDF KREAWRAAGV WNSPADDPAI FTNVAEYDAL QKGTWTDYQK
ELIHPGFQQN YQLGFRGGSE KLKSYVSVDY FNEKGVLKMD EMKRYTARLN VDYTLTDWMK
IGLQSQLTYY NQSVRRDPLN QANKISPLGS LYDENGNFNF IMLDGQTANP LSDEQPGVFN
NNILTTRTLT NGYVEITPLK GLTFRSTLGA NLSSSRNGAY SSPKSIDRSL TGKSLATYNV
SNGRTINWEN VLTYQKVFEQ HSFTFTGIGS SLATVSDNAS ASGVNQLIPS QLFYSLGSAT
EEIKINSAYS KNNLVSFAAR VNYGFKERYL LTLTARKDGS SKLAPGNKWT FFPSAAFAWR
IIDEGFMKNV KKLSDLKLRV SYGIAGNDPS GPYATQTTLT RIAFGFDEVA YPAYTFSRNV
GNAALGWELS ATQNLGLDFG LFDGRINGSI DYYDTRTSDL LLDRGLPPTT GVTTVKQNIG
KTRNRGIEVV LGTTNVRTRD FTWNTNLTFT KNKEEITELV TEGNDIGNGW FIGSPISVFY
DYEKLGIWQT SEAEQAKAMS PTQLPGEIKV KDQNGDGKID AVNDRVILGT PRPKWSGGLD
NTIKFKGFDL NFMIYARIGS MINSDRYARF DQQGVGNSTA GLDYWTPENP TNDYPRPNKN
AGLKYLSTLG YRDASYARIR NVTLAYNLPV DKFNWKIIRG LRIYATAKNL ATFTKLDYDP
ERGGSENFPM TKLFVFGLNV NL
|
|---|
| |