| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1390 |
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| Symbol | |
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| ID | 8224961 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 1637546 |
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| End bp | 1640659 |
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| Gene Length | 3114 bp |
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| Protein Length | 1037 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644929250 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003085802 |
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| Protein GI | 255035181 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.488249 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATGTAA AATTACCCAC CCATCCATGG GCCCGTATTC TCGTCGTTTT GGCATGGCTC
GCCCCGCTGT GGCTGCACGC CCAGAATCCA AAGGACGTTA CCGGTGTGAT TACCGACAGC
CTCACCAAAC AGGGCCTGCC CGGCGTGACC GTCGTGGTAA AAGGAACGCA GCGCGGCACC
ACCACCGATG CCGATGGCCA CTATGCCGTG CAGGCGGCGG CTTCCGACGT GCTTACATTC
AGTTATGTCG GTTATGTGAT GAAAGAAGTG CCGGTGGGTA ATCAGTCGGT GATCGAAATT
GCTTTGCAGC CGAGCACCAA TGCCCTCGAC GAGCTGGTGG TGGTTGGTTA TGGAACAATG
AAAAAAAGCG ACCTCACCGG CGCCGTGATC CGCATTGATT CTAAAACCTT CAAAAATCAG
CCGATGACGC AGCTCACCGA CATGCTTACG GGAACGGTAG CGGGTTTCAA TGCGAACCAG
GCCACATCGG CGGCTGGCGG GAGCTCGCTG CAAATCCGCG GCCCGAAATC GCTCACGGCC
AATTCGAGCC CGATGGTGGT AATGGACGGG GTGATTTTCA ACGGAAGCAT TGCCGATATC
AACCCGGCGG ACATTGAAAC GATGGATATT CTCAAAGACG CCAGCTCGGC GGCGGTGTTC
GGTGCGCGCG CGGCCGGGGG CGTGATCCTG ATCACGACCA AAAAGGGTGC TACCGGCAAG
CCGGTGATCA ACGTGTCGGC GAACGTGGGC ACGGCGCAAA CTACGAACGA ATTCAAGCCG
TTCGATAAAG ACGGTTACCT GAGCTTCCGC CGGGACCTGC TCCGGGCGAC TAACCCCGAC
CGGCCATCTT TTTACTACGA TAACCCGGGT ACGCTACCGG CTGGTGTGAG CCTCGAACAG
TGGCGCACCG CAAGTAACAA CCCGCAAACG GACAATACCC AGGAATGGCT CAGCCGCCTG
CGCTTCTTCC CGATCGAAAC TGAAAACTAC CTCGCGGGCA AAACCGTGGA TTGGTACAAA
GAGGTGATCC GCACCGGCTT ACGGCAGAAT TACGATGTCA GCATCGGCGG CGGATCGCAG
AATGTGACCT ATTACTGGTC ATTGGGATAT CAAAACAATG AGGGCGTGCT GCGCGGCGAT
AAGTTTTCGA CGATCCGCTC GCGCCTGAAT GTGGATTTCA AGGTCACCGA CTGGCTCAAT
GTGGGCGTGA ACACGCAGTT CGCCGACCGA GACGAGAGTA CCGTAGCCGC GTCGCTTGGC
CAAATGTACA TCATGAGCCC CTATGGTTCG ATGTTTGAAG AAAACGGAGA TGTGATGTGG
TTTCCCAACA GTTTCGCAGT GGCCAACCCG CTGATCAACT ATTTTGGTCA GGACCGGATG
AAGAAAGTGA ATACGCTTTT TGCTTCGCTG TATGGTAAAA TCAAGCTCCC GTTCGGATTT
GACTACAAAA TAAGTTTTCA ACCGCGTTAT GAGACGTCGA AGGACTATAA CTATTGGTCC
CCCAGCACGA TTGACGGTGG CTCCACGCGC TCGGGCGGGT ACGGGACGCG GGCGGACGCA
TCCGCGTATG AGTACATCCT GGACAACCTC CTGCATTGGA ACAAGCAATT CGGGATTCAC
CAGTTCGACG TCACCCTACT GTACAGCGCC GAGCGCAACC GCGGATGGTA TTCCAGGATC
GCCAACCAGG GCTTTGTACC CAATGGCAAC CTGGGCTTCC ACGGCATGCA GTACGGAACA
AATCCCGCCA TGGAAACCAA TGATACGCAA ATCACCGGCG ACGCAGCCAT GGCCCGCCTC
AACTACACGC TGCTCGACAA GTATCTGATT ACCGCCTCCG TTCGCCGCGA TGGCTTCTCT
GCATTCGGTA CCAAGCAGCC GCGCGCCGTT TTTCCCGCAG CAGCCATTGC CTGGAAAATA
TCGGAAGAGA AGTTTTTTCA GCTTGATTTT GTGAGCCAGA TGAAACTTCG CTTGTCGTGG
GGTGTGAATG GTAACCGGGA TATCGGTGCT TATTCGGCCC TGGCGCAGCT GCTTTCGGCC
ATGTACTACG ACGGTACCAA TGTGCAGGTG GGCGTGTACA ACACCTCGCT GGCCAATCCG
AACCTGGTTT GGGAAAAGAC GAAGTCGATC AACCTGGGTA TGGACCTGAG CCTGCTTAAA
AACCGGATCG ACCTGAGCGT GGAATATTAC GATATGACCA CCACCGACCT GCTCATGAGG
CGGCTCCTGC CCGAAATCAC GGGTTTTAAG GACATTACCA CCAACCTGGG GCTGCTCGGG
AACAAGGGTT TTGAAATGAC CATCAACACG GTGAATACCG AGCGGCCCAA TTTCTCATGG
CGCAGCGGAC TGGTATTTTC ATTTAACCGA AACAAAATCA AGCGGTTATT CGGCGATTAC
AAGGAAGAAA CCGTGGATGG TAAAACCGTG ACGAGGGAGC TGCCCGACTA TTCCAACGAA
TGGTTCCCCG GCCAGCCCAT CGACCGGGTT TGGAACTACA ATGTGACGGG CATCTGGCAG
ACGGCTGAAA AGGACGCGGC GGCGGTATAC AAATTGCAGC CCGGCGATTT CAAGGCAGTG
GATGTGGATG GAAACGGCAA ATACGAGGCG TTGATCGACA AGCAATTTAT CGGCTACCGG
CAACCGCGTT TCCGGATCGG TTTGCGGAAC GAGTTTACAT TCTTCAAAAA CCTGACAGCC
AGCGTATTCC TCAGGAGCGA ACTCGGGCAT ATGGCACCGT TTGCGGAAGG TTTGCGCACG
GGCGGTGCCG ATACGTACGA CCGCCGGAAT ACAAACGATT TTCCCTACTG GACACCCGAA
AACCCGACCA ACGATTATGC GCGGCTGAAC ACCAACACGA ACGTGTTCGG CGGGGGGATC
AAGGTTTATA AAAAACTTTC GTTCCTCCGC GTTCAGGACG TGAATGTAGG CTATTCGCTA
CCTTCTGAAC TTTCCAGGAA GCTGAAAGTG AGCAGTGTGC GTGTTTTCGC ATCTGCCCGC
AACCTGCTCA CATTCACCCG GTGGCCAGGC TGGGACCCCG AGGCCTGGGA TACCGAAGGC
AATAACTTGC CAATGCCGAA AAACTTCACG GTTGGCTTCA ACCTGTCATT GTAA
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| Protein sequence | MHVKLPTHPW ARILVVLAWL APLWLHAQNP KDVTGVITDS LTKQGLPGVT VVVKGTQRGT
TTDADGHYAV QAAASDVLTF SYVGYVMKEV PVGNQSVIEI ALQPSTNALD ELVVVGYGTM
KKSDLTGAVI RIDSKTFKNQ PMTQLTDMLT GTVAGFNANQ ATSAAGGSSL QIRGPKSLTA
NSSPMVVMDG VIFNGSIADI NPADIETMDI LKDASSAAVF GARAAGGVIL ITTKKGATGK
PVINVSANVG TAQTTNEFKP FDKDGYLSFR RDLLRATNPD RPSFYYDNPG TLPAGVSLEQ
WRTASNNPQT DNTQEWLSRL RFFPIETENY LAGKTVDWYK EVIRTGLRQN YDVSIGGGSQ
NVTYYWSLGY QNNEGVLRGD KFSTIRSRLN VDFKVTDWLN VGVNTQFADR DESTVAASLG
QMYIMSPYGS MFEENGDVMW FPNSFAVANP LINYFGQDRM KKVNTLFASL YGKIKLPFGF
DYKISFQPRY ETSKDYNYWS PSTIDGGSTR SGGYGTRADA SAYEYILDNL LHWNKQFGIH
QFDVTLLYSA ERNRGWYSRI ANQGFVPNGN LGFHGMQYGT NPAMETNDTQ ITGDAAMARL
NYTLLDKYLI TASVRRDGFS AFGTKQPRAV FPAAAIAWKI SEEKFFQLDF VSQMKLRLSW
GVNGNRDIGA YSALAQLLSA MYYDGTNVQV GVYNTSLANP NLVWEKTKSI NLGMDLSLLK
NRIDLSVEYY DMTTTDLLMR RLLPEITGFK DITTNLGLLG NKGFEMTINT VNTERPNFSW
RSGLVFSFNR NKIKRLFGDY KEETVDGKTV TRELPDYSNE WFPGQPIDRV WNYNVTGIWQ
TAEKDAAAVY KLQPGDFKAV DVDGNGKYEA LIDKQFIGYR QPRFRIGLRN EFTFFKNLTA
SVFLRSELGH MAPFAEGLRT GGADTYDRRN TNDFPYWTPE NPTNDYARLN TNTNVFGGGI
KVYKKLSFLR VQDVNVGYSL PSELSRKLKV SSVRVFASAR NLLTFTRWPG WDPEAWDTEG
NNLPMPKNFT VGFNLSL
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