| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1098 |
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| Symbol | |
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| ID | 8224669 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 1301345 |
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| End bp | 1304662 |
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| Gene Length | 3318 bp |
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| Protein Length | 1105 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644928960 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_003085512 |
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| Protein GI | 255034891 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.939091 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.767755 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCAAAA AATTTTACTT ATGCTTCCGG CTGAGTATTT TCAGAAGAAG CGCGTACACG
GGGCTCATGC TCACGGGGCT GCTCTACTGC CACGCGGGTG TGGCGCAGTC GGTGGTTACC
GGGCAGGTGA TCTCCGACGA TGACAAAGCG CCCCTCGCAG GCGTGAGCGT TATCGAAAAA
GGCACCAACA ACGGTACCGT AACCGATTCG AACGGAAAGT ACCAGATCTC GGTGAAAGGC
GCCAGCGCGG TGCTGACGTT CTCATTCCTG GGTTACGTTT CACACGAAGT GACGGTAGGC
GGCCGGGCGG TGGCCGATGT GACGCTGTTT GCGGATTCGA AACAGCTCTC GGAAGTGGTC
GTAACCGCGC TGGGTATTAA AAAGGACGTC CGTAAGCTCG GCTACGCGGT GCAGGAGCTG
AAAGGCGAGA GCATTGTAAC GGCGCGCGAG ACGAACATTG TGAACCAGCT GGCCGGAAAA
GTGGCCGGGG TGACGGTTGT GGGCAGCCCG TCGGGGATCG GCGGTTCGGC GCGGGTGACG
ATCCGCGGCG AGCGTTCGGT GGATTTGAAC AAAAACCAGC CATTGTACGT GATCGACGGG
GTGCCGATCA GCAACTCGAT CACCGGCGGG TCGGGCCAGG GCAACCTGGA AGTCGATTTC
GGGAATGGCG CTAGCTTCAT CAACCCCGAC GATGTGGAAA CAATGAGTGT GCTCAAAGGA
CCTGCCGCAG CGGCTTTGTA TGGTTCGAGA GCGGCCAACG GGGTGATCCT CATCACCACC
AAATCCGGCA AGGGCAACAA GGGCATCGGC GTGGAGGTTA ACAGCAATAC AACCTTCGAA
CGCGCATTAA AACTCCCTGA ATATCAAAAC AAATACGGCC AGGGCAACGG TAACGGCGGC
GATTTCGCAT TCGTGAATGG CGGAGGCGGT GGCCTAACTG ACGGTACCGA CGAAGGCTGG
GGGCCGGAAT TTAAAGGACA AAGCTACCCG CAATACAACT CACCACGCAC ACTGAACGGA
CAGCCGATCC CATACCTCGG CGGCGACCTC AATGCCCCCG CAGGCAGCGT GATTACCGCT
ACGCCGTGGG AAGCGGATGT CGACGGATTG AAAGACTTCC TCCAAACCGG CCGCACGCTC
ACGAATAACA TCGCATTGAT CGGCAACAAC GGCCAGGGTA ATTTCCGCCT GTCGTATACA
AATCTGGACC AGACAGGGAT CGTGCCGAAC ACCGATCTGA AACGCAATAC CGTCTCATTG
AGTGCGGGTT ACAACCTTAC CAAGAAGTTT TCGGCCAAGA CTTTCGTGAG TTACGTGAAG
GGCGCGAGCG GTAACCGGCC GTCCATCAGC TATGGTACCG AGAGCATTAT GTACCTCTTC
AACTGCTGGC TGCCGCGGTC GGTGAAGGTT TCGGATATGA AACGTTTATG GATGAACGGA
CTGGAAGACC AGCGCCAGTT CAGCTGGAAC TACAACTACC ACGATAACCC TTATCTGACG
GTTTTTGAAA ACACCAACAG TCAGGACGTG AACCGCATCA TCGGCAATGT GATCCTGAAA
TACGATTTTA CCGACTGGCT GAGCCTGCAA GTGCGCACGG CCACCGACTG GGGCAACGAG
CGCCGCGAAT ATCGCCGTGG GTTCAGCACC CAGCGCTTCC CGTTCGGGCA GTACCGCGAG
GTGAAGATCA ACACCGAAGA GCGCAACTCC GATTTCCTGC TGTCGTTCAA CAAGGATGTG
AGCAAGGACA TCAATATTTC GGCTACATTC GGTGGTAACC AGAACCGTCA AAGCTCGATT
TACGACGAAG AAAATGCGGG CCAGCTCAAC CTGCCGGGCA TTTATAACCT TACCAACTCG
CGCATTCAGC TGGTAGCGTC ACAGAGCAAA GTCGGCAAGC GCATCAACAG CTTGTATGGA
TCGGCATCGG TTTCTTTCCG CAATTATTTG TTCCTCGACG TTACCGCACG CAACGACTGG
AGCAGCGCAT TGACGCTCCC CACAGCCCTG AAAGCGTTCG GTACCGAAAA CAACTCTTAC
TTCTATCCAT CGGTAGCATT AAGCGCCGTA GTGAGCGATA TGGTGAAACT TCCGGAGGTA
ATGTCCTTTG CCAAGCTGCG CGCCAGCTTC GCCCAGGTGG GTAATGATAC CGATCCTTTC
ACGTTCACCC AGGCCTACAA TCCCAGCACG CCTTACGGCA GCTCGCAGAT CTACGGCGAA
ACAGACCGTT TGGCTAACCT GAACCTGAAA CCGGAGATCA GTACGGCTTA CGAACTGGGC
GCCGACCTGC GTTTTTTCAA AAACCGCGTG GGATTGGATT TTACATTCTA TCAAAGCAAA
ACCAAAAATC AGATCCTTCA AATCCCGCTT TCGCAGACGA CAGGGTATAA TGGCCGTTTC
TTCAATGCAG GTGAGATCAA AAACTGGGGA TTTGAAACCA TGCTGAATGT AACCCCGGTG
GAAATCAATG ATTTCAAATG GAATATCGGC GTAAACTTCT CGGCCAACCG CAGCAAGGTG
CTCGAACTGT CCGACGGCAT CACCAACTTC GTAATGGCCA GCAAGGGTGT CAGCATAGAG
GCGCGCGTAG GCGAGCGGAT GGGCGATATG TATGGGATCG CGTTCGCACG TGTGCAGAAC
ACAAACCCTT CGGCGCCATA TTACGATGCT ACGGGCCAGA ATGTGGGCCA GATCGTTTAC
AAAGACGGTC GTCCGGTGCC TACCACCAAT GTTCAGAAAA TGGGTAACTA CAATCCCGAC
TGGCTGGCAG GTATTTCCAA TCAGTTCAAT TACAAGAATT TGAAACTGAG CTTTTTGTTT
GATGTGCGTC ATGGAGGAAA GCTGTATTCT CATACACAAA CCGTTGGTCG TGAAGGTGGT
ATCATCAAAG AAACCCTCGA AGGACGTGCA GACGGCTACG ACCTGAGCAA ACCGGGCAAT
GGGGTGATCG GCGACGGCGT GGTGCAGAAT GCAGACGGTT CTTACAGCAA AAATGAAGTG
AAACTGACCG CCCGCGCATG GCATACCGCC TACACCGGCG GCCGTAACAT TGCCGAAGGG
GTGATGTACG ACGCGTCTTT CGTGAAACTC CGCGAAGTAC AGCTGGGCTA CTCGATCCCG
AACCGCCTGC TGGGCCGCTC GCCGATCAAG AACATCACTG TTTCGTTCGT GGGACGTAAC
CTTGCATTGT GGTCGAAAGT GCCGCACGTG GACCCAGAAA CAATGGCTTA CAACGGCGGA
ACTGCATTGC CGGGTATCGA ATACATGTCG ATCCCTTCCA GCCGCAGCTA TGGTTTCAAT
GTGAGTTTCA AACTGTAA
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| Protein sequence | MIKKFYLCFR LSIFRRSAYT GLMLTGLLYC HAGVAQSVVT GQVISDDDKA PLAGVSVIEK
GTNNGTVTDS NGKYQISVKG ASAVLTFSFL GYVSHEVTVG GRAVADVTLF ADSKQLSEVV
VTALGIKKDV RKLGYAVQEL KGESIVTARE TNIVNQLAGK VAGVTVVGSP SGIGGSARVT
IRGERSVDLN KNQPLYVIDG VPISNSITGG SGQGNLEVDF GNGASFINPD DVETMSVLKG
PAAAALYGSR AANGVILITT KSGKGNKGIG VEVNSNTTFE RALKLPEYQN KYGQGNGNGG
DFAFVNGGGG GLTDGTDEGW GPEFKGQSYP QYNSPRTLNG QPIPYLGGDL NAPAGSVITA
TPWEADVDGL KDFLQTGRTL TNNIALIGNN GQGNFRLSYT NLDQTGIVPN TDLKRNTVSL
SAGYNLTKKF SAKTFVSYVK GASGNRPSIS YGTESIMYLF NCWLPRSVKV SDMKRLWMNG
LEDQRQFSWN YNYHDNPYLT VFENTNSQDV NRIIGNVILK YDFTDWLSLQ VRTATDWGNE
RREYRRGFST QRFPFGQYRE VKINTEERNS DFLLSFNKDV SKDINISATF GGNQNRQSSI
YDEENAGQLN LPGIYNLTNS RIQLVASQSK VGKRINSLYG SASVSFRNYL FLDVTARNDW
SSALTLPTAL KAFGTENNSY FYPSVALSAV VSDMVKLPEV MSFAKLRASF AQVGNDTDPF
TFTQAYNPST PYGSSQIYGE TDRLANLNLK PEISTAYELG ADLRFFKNRV GLDFTFYQSK
TKNQILQIPL SQTTGYNGRF FNAGEIKNWG FETMLNVTPV EINDFKWNIG VNFSANRSKV
LELSDGITNF VMASKGVSIE ARVGERMGDM YGIAFARVQN TNPSAPYYDA TGQNVGQIVY
KDGRPVPTTN VQKMGNYNPD WLAGISNQFN YKNLKLSFLF DVRHGGKLYS HTQTVGREGG
IIKETLEGRA DGYDLSKPGN GVIGDGVVQN ADGSYSKNEV KLTARAWHTA YTGGRNIAEG
VMYDASFVKL REVQLGYSIP NRLLGRSPIK NITVSFVGRN LALWSKVPHV DPETMAYNGG
TALPGIEYMS IPSSRSYGFN VSFKL
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