| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_0580 |
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| Symbol | |
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| ID | 8224149 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 658357 |
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| End bp | 661473 |
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| Gene Length | 3117 bp |
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| Protein Length | 1038 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644928456 |
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| Product | heavy metal efflux pump, CzcA family |
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| Protein accession | YP_003085010 |
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| Protein GI | 255034389 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3696] Putative silver efflux pump |
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| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00250892 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00955632 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAACAAAT TCATTCGGGG AATCGTTGGG TTTTCGCTTC GGAACCGGTT CTTCATATTT
TTTCTGACGG GGTTGCTGGT GGTCGCGGGG GTTGCGAGCT ACCGGGCTAC GCCGCTGGAA
GCATTTCCGG ACATTACCAA CACGCAGATC ATCATCGTTT CGCAATGGAA TGGGCGCAGT
GCCGAGGAAA TCGAGCGGTT TGTGACGCAG CCTGTCGAGA TTGCCATGAA TTCCGTGCAG
AAGAAAGCCA ATGTGCGGAG CGTGACGATG TTCGGGTTGT CGGTGATTAA GATTATTTTC
GACGACGGGG TGGAGGACTT TTTTGCACGG CAACAGGTTA ATAACCAGCT GCGTACGGTT
TCCCTTCCCG AAGGCGTAGA CCCGGAAGTG CAGCCGCCTT ACGGACCTAC CGGGGAAATT
TTCAGGTATA CCCTCGAAAG CAAGGACCGC GACAGCCGCG AGCTGCTGAC ACTGCAAAAT
TGGGTAATCG ACAGGCAATT ACGGAGCGTG CCGGGTGTGG CGGATGTGGT GGCATTCGGC
GGCCGCGAGA AGATTTACGA GGTGCAGGTT GACCCTACCG CACTGGCCAA ATACAATATT
ACGCCGCTGG ACGTGTACGA GGCGGTTACC AAGAGCAATA TCAACGTCGG CGGTGATGTG
ATCGAGAAAA ACGGCCAGGC GTACGTGGTG CGGGGCATCG GGCTCCTCGA ATCGGCGCAG
GACATCGAGA ACATTATCGT TGAATACGTG AAGGACTATC CCGTGCTGGT GAAGCACGTG
GCGGATGTGC GCGAGTCGGA TTTGCCGAGG GTGGGGCAAG TGGGGCTGGA TGGCCGCGAC
GACGTGGTCG AGGGCATTGT TGTGCAGCGG AAAGGCGAAA ACCCGAGCGA AGTGCTGGCC
GCTATCAAGG AGAAAATCAG CGAGCTGAAT ACAAAAATAC TGCCGCCGGA TGTGAAAATG
GTGACGTTCT ACGATCGCGA CAATCTCATC GAATTCTGTG CCGAAACGGT GAAGCATAAC
TTGTTGGAAG GTATTGTGTT TGTGACGGTT ATCGTGTTCC TGTTCATGGC CGATTGGCGG
ACGACGGTGA TCGTGTCGAT CATCATTCCG CTCGCGTTGC TGTTTGCATT CATGTGTTTG
TATCTCAAAG GGATGTCGGC CAACCTGCTA TCGATGGGGG CGATAGACTT CGGGATCATC
ATTGATGGAG CCGTGGTGAT GGTGGAAGGT GTGTTCGTGG CGCTGGACCA CCTCGCGCAC
AAGCGGGGAA TGGAGCGTTT CAACCGCTTA TCGAAGCTGG GATTGATCAA AAAGACGGGC
GGAGAGCTTG GGAAAGCCAT TTTCTTTTCA AAACTCATCA TTATCACGGC ATTGATCCCC
ATTTTCAGTT TCCAGAAAGT GGAGGGTAAA ATGTTCAGTC CGCTGGCTTA CACGCTGGGT
TTTGCGCTGC TGGGGGCATT GTTTTACACG CTTACGCTCG TGCCGGTGCT GTGTTCGTTT
TTGCTGAACA AGAACGTGCG CGAAAAGAAC AATCCGGTCG TCAATTTCTT CGATAAAACC
GTTTCGCGGG GCTTTGAATG GTGTTATGCG CATAAAAAGC TAAGCATGAT CGCCGCCACG
GCTTTTTTGG GCGTGTCGCT GTTTTCGGCG ACGCTGCTTG GCACCGAGTT TTTGCCGCAG
CTGAACGAAG GGGCGTTATG GGTGACGGCC GAGCTGCCGA TGAGCATGTC GCTGCCCGAG
AGCGTGAAAA TGTCGCAAAA GATCCGCCAC GACCTGAAAA CATTTCCCGA AGTGAAGCAA
GTGCTTTCCC AGGTAGGCCG CTCCAATGAC GGCACCGACC CTAACGGCTT CTATTTCTGT
CAGTTCCAGG TTGATCTGGT GCCGCAGAAG GAATGGAAGC GGGAGATCAA CCAGGAGCAA
CTTACCGACG AGATGAACGC GCTGCTCAGC CAGTACCCGG GCGTTTTGTA CAACTATTCG
CAGCCGATCG TCGATAATGT GGCCGAGGCC GTGGCGGGTT ACAAGGCGAG CAATGGTATC
AAAATATTCG GTAGCGATTT GGAGGAGCTG GAAAAATACG CCAATGTGGC CATGGACGCC
GTGCGGAATG TGGACGGTAT CAAAGACCTC GGCCTGATCC GCAACATCGG CCAGCCGGAA
ATCAGCGTCA TCCTCCACGA CCACAAAATG GCGCAATACG GCGTGAGCAC GGCAGATGCG
CAGGCGGTGA TCGAAATGGC GATAGGAGGG AAAACGGCCT CCATTCTGTA CGAAGGCGAG
CGGAAGTTCG ATATCCGGCT GCGCTACAGG CAGGAATCGC GCCGTGACGA GCAGAGCATC
CAGCAACTGA TGGTGCCGAC GCTCACGGGC GCCAAAATTC CTTTGAAGGA AATCGCGACG
ATCCGCAAAA TCACCGGTCC CGCCTTCGTT TACAGGGATA ATAACAAGCG ATTTATCGGT
GTTAAATTTT CTGTCCGCGG AAGAGATCTC GGCGGAACGA TCGCCGAAGC GCAGCAGCGC
GTGAAAGAAA AGATGAACGA CCTGCCCAAA GGTTACTCCG TGGAATGGGT AGGGGAATTC
GAAAACCAGG TCCGCGCTAC CGACCGGCTC GCGCAAGTGG TGCCCGTGAG CCTGATCGGG
ATTTTTATCC TGCTGTTTAT CATGTTCAGC AATGCCAAAG ATGCCGGCCT GGTGCTTGCC
AATGTGCCTT TCGCGCTGGT GGGGGGCATT CTCGCGCTGC ACGTTACGCA TATGAACTTC
GGGATTTCGG CGGGTGTGGG TTTCATCGCG CTGTTTGGGT TATGTGTGCA GAATGGGGTG
ATATTGGTGT CGGTATTCAA CAAAAACCTG GCGGCGCGGA TGCCGCTGGA AGAGGCGGTG
CGGCAAGGTG TGAAATCGCG GATCAGGCCG GTGGTCATGA CTGCCCTGAT GGCGGCGATC
GGGTTGCTGC CGGCGGCAAT GTCGACGGGC ATCGGGTCCG AAACGCAAAA ACCGCTCGCC
ATCGTGGTGA TCGGCGGGCT GATCACGGCC ACCGTGCTGA CGCTGCTCGT GTTCCCGATT
ATTTACACAT TCTTTAACCG GAAAAAGCAG TTGGGAAAAC AACGCATTGC CGGTTGA
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| Protein sequence | MNKFIRGIVG FSLRNRFFIF FLTGLLVVAG VASYRATPLE AFPDITNTQI IIVSQWNGRS
AEEIERFVTQ PVEIAMNSVQ KKANVRSVTM FGLSVIKIIF DDGVEDFFAR QQVNNQLRTV
SLPEGVDPEV QPPYGPTGEI FRYTLESKDR DSRELLTLQN WVIDRQLRSV PGVADVVAFG
GREKIYEVQV DPTALAKYNI TPLDVYEAVT KSNINVGGDV IEKNGQAYVV RGIGLLESAQ
DIENIIVEYV KDYPVLVKHV ADVRESDLPR VGQVGLDGRD DVVEGIVVQR KGENPSEVLA
AIKEKISELN TKILPPDVKM VTFYDRDNLI EFCAETVKHN LLEGIVFVTV IVFLFMADWR
TTVIVSIIIP LALLFAFMCL YLKGMSANLL SMGAIDFGII IDGAVVMVEG VFVALDHLAH
KRGMERFNRL SKLGLIKKTG GELGKAIFFS KLIIITALIP IFSFQKVEGK MFSPLAYTLG
FALLGALFYT LTLVPVLCSF LLNKNVREKN NPVVNFFDKT VSRGFEWCYA HKKLSMIAAT
AFLGVSLFSA TLLGTEFLPQ LNEGALWVTA ELPMSMSLPE SVKMSQKIRH DLKTFPEVKQ
VLSQVGRSND GTDPNGFYFC QFQVDLVPQK EWKREINQEQ LTDEMNALLS QYPGVLYNYS
QPIVDNVAEA VAGYKASNGI KIFGSDLEEL EKYANVAMDA VRNVDGIKDL GLIRNIGQPE
ISVILHDHKM AQYGVSTADA QAVIEMAIGG KTASILYEGE RKFDIRLRYR QESRRDEQSI
QQLMVPTLTG AKIPLKEIAT IRKITGPAFV YRDNNKRFIG VKFSVRGRDL GGTIAEAQQR
VKEKMNDLPK GYSVEWVGEF ENQVRATDRL AQVVPVSLIG IFILLFIMFS NAKDAGLVLA
NVPFALVGGI LALHVTHMNF GISAGVGFIA LFGLCVQNGV ILVSVFNKNL AARMPLEEAV
RQGVKSRIRP VVMTALMAAI GLLPAAMSTG IGSETQKPLA IVVIGGLITA TVLTLLVFPI
IYTFFNRKKQ LGKQRIAG
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