| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_0247 |
|---|
| Symbol | |
|---|
| ID | 8223813 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 275843 |
|---|
| End bp | 277705 |
|---|
| Gene Length | 1863 bp |
|---|
| Protein Length | 620 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644928126 |
|---|
| Product | glycoside hydrolase family 2 sugar binding |
|---|
| Protein accession | YP_003084683 |
|---|
| Protein GI | 255034062 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAG TAGTGCTTAG CCTGGGCATC GTCCTGGGCA GCCTGTACGG TCCGGCTTTC
GCGCAGCAAA CTACCGATTG GAAGTACGTG CAAAGCAAGA TCGTAACACC CTGGGCAGAA
AAAGTGGTTG CCCAAAACCC GCATCCCGAG TACCCCCGTC CGCAAATGGT ACGCCAGAAC
TGGCAGAATA TCAACGGCCT GTGGAATTAT GCCATTGTGC CTCAAAGCGC CGGTGACACC
AAACCCGCCA TATTCGACGG AAAGATACTG GTCCCGTTCG CCGTGGAATC GGCACTGTCG
GGCGTGGGCA AAACAGTAGG GAAGGACAGC GTGCTCTGGT ACCAGCGCCT GATCGACTTT
TCGCCCAAAC TGAAAGACCA GCGCGTGCTG ATCCATTTCG GCGCAGTGGA CTGGCAAGCA
GAAGTATTTG TAAATGGCAA GCCCGCAGGA AGCCATCAGG GCGGCTACGA TCCGTTCTCA
TTTGACATTA CCGACCTGCT CGTAAAGAAA AAGCAGCAGG AAATCGTCGT AAAGGTGTGG
GACCCAAGCA GCGATGGCCC GCAACCGCGC GGCAAGCAGA TCAAGAACCC GCACGGGATC
TGGTACACGC CCGTAACGGG CATCTGGCAA ACGGTTTGGC TGGAAACAGT GGCGACCAGC
CACATTTCCC GCGTAACGCC GGTGCCCGAT ATTGACAAGC AAACGCTCAC TGTGAATACC
GAAGTTGCCA ATGCAGGCGC TTCCGACAAG GTGAAAATCA CTGCCTGGGA CGGCGTGAAC
AAGGTCGCCG AACAGGAAGT TGCCGCTAAC CAGCCCGCCG TGCTGACCAT CAGCGATGCG
AAACTATGGT CGCCGGACTC GCCTAACCTG TACAACCTCA CGGTCAGCCT CACGCGCAAC
GGCAAGGCCG TGGACGAAGT GAAAAGCTAC GCGGCCATGC GCAAAATTGG CGTGCAGGTG
GATGAAAACG GCATCCAGCG CATGACGCTA AACAACAAAT TCCTGTTTCA ATACGGTCCG
CTCGACCAGG GCTGGTGGCC CGACGGTCTC TACACCGCGC CTACCGACGA GGCATTGAAG
TTCGACATCC TCAAAACGAA GGAAATGGGC TTCAACATGA TCCGCAAGCA CGTAAAAGTG
GAGCCCGCAA GATGGTACCG CTATTGCGAT GAACTTGGAA TGCTGGTGTG GCAGGATATG
CCTAGCGGTG ACATGGGTAA CCACTGGGAA ATGCGCCCGG GCATTACCGG TAACGAAACC
GACAAGCAGC GTACGCCGGA GTCGGAAAAC ATTTTTAAGA CCGAGTGGAA GGCGATTATG
GATGCCAACC GTTTCTTTCC TTCGATCGTA GTTTGGGTGC CGTTCAATGA GGCCTGGGGG
CAGTTCAAAA CGGCTGAAAT CACGAACTGG ACGATGCAGT ACGACCCTTC GCGCCTTGTA
AACAGCGCCA GCGGCGGTAA TTTCGAGCCG GTTGGTCACA TTATTGATTT GCACAACTAC
CCGGCACCCG TCATGCCACG GCCCGATTTG TTCGGCCAGA AGCAGATCAT CGTGTTGGGT
GAATTCGGCG GGTTGGGCCT GCCGGTTGAC CAGCACGTTT GGCAGCAGAA AGACAACTGG
GGGTATCAGA GCTTCAAAAA CCAGGAGGAG CTGTATAATC GCTACGAGTC GTTTATCAAC
CGGTTCGAGC CGTTGATCAA AAAAGGACTT TCGGCGGCGG TTTACACGCA AACGACCGAC
GTGGAAGTGG AGATCAATGG TCTGATGACC TACGATCGCA AGGTGATCAA ATTCCCCGAG
GCGAAGTTGA AACAGATCCA TTCGAAGCTG TACGATCCCT CGTTTGTGAA GCTGAAACCA
TAA
|
|---|
| Protein sequence | MKKVVLSLGI VLGSLYGPAF AQQTTDWKYV QSKIVTPWAE KVVAQNPHPE YPRPQMVRQN
WQNINGLWNY AIVPQSAGDT KPAIFDGKIL VPFAVESALS GVGKTVGKDS VLWYQRLIDF
SPKLKDQRVL IHFGAVDWQA EVFVNGKPAG SHQGGYDPFS FDITDLLVKK KQQEIVVKVW
DPSSDGPQPR GKQIKNPHGI WYTPVTGIWQ TVWLETVATS HISRVTPVPD IDKQTLTVNT
EVANAGASDK VKITAWDGVN KVAEQEVAAN QPAVLTISDA KLWSPDSPNL YNLTVSLTRN
GKAVDEVKSY AAMRKIGVQV DENGIQRMTL NNKFLFQYGP LDQGWWPDGL YTAPTDEALK
FDILKTKEMG FNMIRKHVKV EPARWYRYCD ELGMLVWQDM PSGDMGNHWE MRPGITGNET
DKQRTPESEN IFKTEWKAIM DANRFFPSIV VWVPFNEAWG QFKTAEITNW TMQYDPSRLV
NSASGGNFEP VGHIIDLHNY PAPVMPRPDL FGQKQIIVLG EFGGLGLPVD QHVWQQKDNW
GYQSFKNQEE LYNRYESFIN RFEPLIKKGL SAAVYTQTTD VEVEINGLMT YDRKVIKFPE
AKLKQIHSKL YDPSFVKLKP
|
|---|
| |