Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_0102 |
Symbol | |
ID | 8223668 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | + |
Start bp | 118113 |
End bp | 120500 |
Gene Length | 2388 bp |
Protein Length | 795 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 644927981 |
Product | TonB-dependent siderophore receptor |
Protein accession | YP_003084538 |
Protein GI | 255033917 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAACAT CTACATTCTG CTGCTCGCGG ACTAGCGGCA GGGAGGCGAA AAATTCATTT TTACTACTCA TTTCATTCGC CCTGTTATGG TGTTCATTTC CCAGTTTCGG CGCTGCGCCG GGGCGGGTGA CAGGCTCCAT TCAAAGCGAA AAAGGCGATG CTATTGCCGG GATCAGCGTG CGGCTGGAAG GCACCAGCTA TGCGGCCGTA ACCGACGCGG ACGGCCGGTT TGACATTAAA AACGTCCAGG CAGGAAGCTA CACGCTCGTT GCCACCGGCG TGGGCCATGA GGCAAAAAAG CAAAATATCG TTCTCAAAGA TGGCCAGGCG CTGGAATTGA ATTACAAACT CAATACCAGC ACCAACGAGC TTTCCGAGGT CGTGATCAGT ACCGCGCGGC GCCAGGCTTA TTCGGGCATT AACAAAATCG ACGTCCCGCT GCGCGATATG CCCATCACCA CTTCCACCAT ATCGGCAAAA ACGATCGAAC AGCGCGGTAT CGACGATTTG GGCGAGGCCA TGAAAAATAC GACAGGCGTG CGGGCCAACA ACACCTACGG CGGCTTTCAG CATTTTACAA TCCGCGGTTT TTCCAACTTC GTGCTTTTGG TGGATGGCGT GCGCGATGAG CGGCACAACA TTTCCACCAG CGCGCCGAAC ACGAACCTGG CCAATGTGGA ATCCATAGAA ATACTGAAAG GGCCGGCTTC CGTGCTGTTT GGACATTCGG CATTGGGCGG CATTATCAAT ATCGTCAGAA AAAGGCCCAC TGCGGGCTTT AAGGCGGACT TTTCGGCTAG TTATGGCAGC TTTAATACAA GAAGAATCCG TGCCGGTGCG GGCGGGGCAA TCAGCGATAA GCTGCGCTAC CGCGTGGATT TCGGCATGTC GGACACCGAC GGCTTCCGGC ATTCGGGGTC AAATACCAAC AATGGCTACC TGGCATTGGA ATACACGCCG ACGGACAAAG ATCAGTTCTA CCTGACCATC GGGGCCAACA AAGACATTTA CGATACCGAC GCAGGTATTC CTGTGCTCGA AGGCAGCAAA GCAGCTCCGG GCATGAATGT AAATACCCGC TACAACGACC CGCAGGATTT TCTCAAACAC ACCCGCTATG ATTTCCAGTT GAAGTACACG CGTCAGTTGG CGAGTAACCT CAAACTGTCG AACCAGCTTT CTTACTACGA CGATAATATC GACTATTTCT CGACCGAGGA GCTGACCTTT ACCCCGGGGA TGGATTCGTT GCAGCGCTCG TTTCCGTTCT ATTTCAACCA CCTTACCAAG CCGTGGCAAA ACCAATTGGA ACTGACCTGG GATTTTAGTA CCGGTCCGAT CGAGCACAAG CTGCTGGCAG GATATTCGGT GAGTATTCTG GATAGAAAAA CGTATAACGG CGATGTTTTT GGCCCGGCCC TGAATGCGAC CATTCCTATC AGTAACCCGA TCCTGAACCA AGGTTATCTG ACGCATAACG ATCTGAATTA CCGGGCAACA ATGGAAAATG TCCACGGTAT TTACGTGCAG GATTTTATCC CTTTCTCAGA CAAACTGAAA GGACTTGCGG GTCTTCGCTA TGATATTTTC AACGGCACCT ATTACACCGA TAAAGTAGAT AACAACCGCA ATGTAACCGA GCACGGCGCA GAATCGACGA TCTCCAAATC CGCATTGACC TACCGATTGG GGCTGGTGTA TCAGCCGGTG GAGCCGCTGT CGGTTTACGG TTCGTTCTCC ACTTATTTCA AACCTGCACG ACGCGTGGCG CCGAACGGCG AGACTTTCGA TCCCGAAACA GGTTACCAGG GTGAAATCGG AAGCCGATTC GAGCTTTCAC GGAAATGGGC GGCTAACCTG GCATTCTATT ACATGCGCAA GAATAACCAG CTCGAAGCGC TTGCTGGTGG CATTTACAGG CGGATCGGCT CGGCGGAGTC CAAGGGCGTT GAGCTGGAAG TGAATGGAAA CTTGCTGCCC GGGCTCGACG TGAGAGCGGG ATACACATTT TCCAAAGCAG AAATCCTTCC TTACTCGCCC GGTGAGGCTA CCAATGCCCT GGCAGGGAAA ACGGTGGCTT TTGCTCCCAA AAACTTGCTG AATGCCTGGG TGAACTATGA AGTGCAGCAG GGTGCTGTAA AAGGACTGAG CCTGAGTGCC GGTGCCAACT ATATGGATGA GACTTTCACA AACAGTTCCA ACAGCTACGT GCTGCCCGCC TACACCGTTT TCGATGCGGC GCTGGGATAC CGGATTGGGA AAATTGGTTT AAGATTGAAT GTCAATAACC TCTTCAACGA AAAATATTTC GCGAATGCCA TTTTCGCAAA CCAGTTCTCG GCCGGCCCGA CCAGAAATTT CCTCGTAACG GTGCGGTATA GCCTTTAA
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Protein sequence | MQTSTFCCSR TSGREAKNSF LLLISFALLW CSFPSFGAAP GRVTGSIQSE KGDAIAGISV RLEGTSYAAV TDADGRFDIK NVQAGSYTLV ATGVGHEAKK QNIVLKDGQA LELNYKLNTS TNELSEVVIS TARRQAYSGI NKIDVPLRDM PITTSTISAK TIEQRGIDDL GEAMKNTTGV RANNTYGGFQ HFTIRGFSNF VLLVDGVRDE RHNISTSAPN TNLANVESIE ILKGPASVLF GHSALGGIIN IVRKRPTAGF KADFSASYGS FNTRRIRAGA GGAISDKLRY RVDFGMSDTD GFRHSGSNTN NGYLALEYTP TDKDQFYLTI GANKDIYDTD AGIPVLEGSK AAPGMNVNTR YNDPQDFLKH TRYDFQLKYT RQLASNLKLS NQLSYYDDNI DYFSTEELTF TPGMDSLQRS FPFYFNHLTK PWQNQLELTW DFSTGPIEHK LLAGYSVSIL DRKTYNGDVF GPALNATIPI SNPILNQGYL THNDLNYRAT MENVHGIYVQ DFIPFSDKLK GLAGLRYDIF NGTYYTDKVD NNRNVTEHGA ESTISKSALT YRLGLVYQPV EPLSVYGSFS TYFKPARRVA PNGETFDPET GYQGEIGSRF ELSRKWAANL AFYYMRKNNQ LEALAGGIYR RIGSAESKGV ELEVNGNLLP GLDVRAGYTF SKAEILPYSP GEATNALAGK TVAFAPKNLL NAWVNYEVQQ GAVKGLSLSA GANYMDETFT NSSNSYVLPA YTVFDAALGY RIGKIGLRLN VNNLFNEKYF ANAIFANQFS AGPTRNFLVT VRYSL
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