| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_0007 |
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| Symbol | |
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| ID | 8223572 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 7343 |
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| End bp | 8914 |
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| Gene Length | 1572 bp |
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| Protein Length | 523 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 644927886 |
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| Product | phosphodiesterase |
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| Protein accession | YP_003084444 |
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| Protein GI | 255033823 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1418] Predicted HD superfamily hydrolase |
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| TIGRFAM ID | [TIGR00277] uncharacterized domain HDIG
[TIGR03319] conserved hypothetical protein YmdA/YtgF |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.0813303 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.187405 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAAATT CTTTGTTCTT CATCGTCATC CTGTCCGATA TCATCGCCGT AGGGGTGGGT
ATTTTTGCAG GTAAGTACAT TTTTCAGCGA TCATTCGACG CAAAGGAAAA GGAAGCCCAG
GACCGTGCCG CTGAGATTCT GCGGAATGCC GAAGTAGCAG CCGAAAACAT CAAAAAAGAC
CGCATTCTAG AAGCAAAAGA AAAGTACCTC CGCCTCAAAT CGGAATTCGA AGAAGACGCC
AACAAGAAGC GCAGCATTCT GCAAAGCAAC GAGCAGAAAC TCAAACAGCG CGAACAGAGC
CTGAACCAGA GCATGGAACA AACCAAGCGC AAGGAAAACG AGCTCGATAA CCTCAAAAAC
AACCTCAATT CGCAACTCGA AGCAGCGACC AAGCGCCGCG AAGAAGCCGA AAAATCCCTC
CAACAGCAGG TTGCCCAGCT GGAAAAAATC GCAAACCTTA CCGCCGAGCA AGCCCGCGAA
CAACTCGTGG ACGCATTGAA GGCCGAAGCC GAAACCCGCG CGGGATCATA TATTAAGAGT
GCCATGGAAG AAGCACGTCT GACTGCCACC AAAGAGGCGA AAAAGATTGT GATCGAAACC
ATCCAGCGCA CCGCCGCCGA GCACGCGATC GAAAACTGCG TGTCGGTATT CAACATTGAA
AACGACGATA TCAAAGGTAA AATCATCGGT CGCGAAGGAC GGAATATCCG TGCCCTGGAA
GCGGCTACCG GTGTGGAAAT CATCGTGGAC GACACGCCTG AGGCGATCGT TATCTCCGGT
TTCGACCCTG TGAGAAGGGA AATCGCACGA CTATCACTGC ACCGCCTCGT GCAGGACGGC
CGTATCCACC CGGCGCGTAT TGAAGAAGTG GTTGCCAAAA CACGCAAAAA CATTGAAGAT
GAGATCGTTG AGATCGGTGA GCGCACCGTG ATCGACATGG GTATCCACGG CCTGCACCCT
GAACTGGTGA AAATGATCGG CCGGATGCGT TTCCGCTCGT CTTACGGACA AAACCTGCTC
CAACACTCCC GCGAAGTGGC CAAATTGTGT GCTACCATGG CTGCGGAGCT CGGCCTGAAC
ACCAAACTGG CTAAACGCGC CGGCTTGCTT CACGATATTG GTAAAGTATG GCCGGAAGAA
TCTGATCTTC CGCACGCAAT CCTGGGTATG GAGCTCGCGA AGAAATACAA GGAAAATCCG
GAGGTTTGCA ACGCCATCGG TGCGCACCAC GATGAAATCG AAATGACGTC GATCCTCTCG
CCGGTAATCC AGGTGTGTGA CGCCATTTCA GGTTCACGCC CGGGCGCACG CCGCGAAATG
ATGGAATCGT ACATCCAGCG CCTCCGCGAC CTCGAAAACC TCGCCCTGTC GTTCGACGGC
GTGGAAAAAT GCTACGCGAT CCAGGCGGGC CGCGAGCTAC GCGTGATCAT CGACGCCGAC
AATGTGTCCG ACGAAAAAGC GGGCTTGCTG TCGTTCGACA TCTCGCAAAA AATTGAAAAA
GAAATGCAGT ACCCCGGCCA GATCAAGATC ACGGTAATCC GTGAAATGCG GTCTGTGGCA
TACGCGCGCT AA
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| Protein sequence | MSNSLFFIVI LSDIIAVGVG IFAGKYIFQR SFDAKEKEAQ DRAAEILRNA EVAAENIKKD
RILEAKEKYL RLKSEFEEDA NKKRSILQSN EQKLKQREQS LNQSMEQTKR KENELDNLKN
NLNSQLEAAT KRREEAEKSL QQQVAQLEKI ANLTAEQARE QLVDALKAEA ETRAGSYIKS
AMEEARLTAT KEAKKIVIET IQRTAAEHAI ENCVSVFNIE NDDIKGKIIG REGRNIRALE
AATGVEIIVD DTPEAIVISG FDPVRREIAR LSLHRLVQDG RIHPARIEEV VAKTRKNIED
EIVEIGERTV IDMGIHGLHP ELVKMIGRMR FRSSYGQNLL QHSREVAKLC ATMAAELGLN
TKLAKRAGLL HDIGKVWPEE SDLPHAILGM ELAKKYKENP EVCNAIGAHH DEIEMTSILS
PVIQVCDAIS GSRPGARREM MESYIQRLRD LENLALSFDG VEKCYAIQAG RELRVIIDAD
NVSDEKAGLL SFDISQKIEK EMQYPGQIKI TVIREMRSVA YAR
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