Gene DehaBAV1_1080 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDehaBAV1_1080 
Symbol 
ID5131969 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDehalococcoides sp. BAV1 
KingdomBacteria 
Replicon accessionNC_009455 
Strand+ 
Start bp1072479 
End bp1073165 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content38% 
IMG OID640530005 
ProductHNH endonuclease 
Protein accessionYP_001214538 
Protein GI147669720 
COG category[V] Defense mechanisms 
COG ID[COG1403] Restriction endonuclease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0178518 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATACCAG GTGAAATCAT CTCCTATCTG GATATGTGCC AAGCAGAGGG AATCAACCTG 
CAAAAAGGCA TGAATTTTAA ACTTCGAAAC GGCAACAATA TTATACTTAT GAGTGTCCGA 
GATGGAGCAC CATACGCAGA CCGTTTTGAA GATGAAGGCA AAGTACTTAT CTATGAAGGG 
CATGACATAA ACAGAACTCA TCCTTCTATA AACCCTAAAA ATTTTGACCA GCCTATGTAT 
ACACAGGGAA ATAAACTAAC TGCCAATGGT CTTTTCTATA ACGCTGCCCA GAAAGCCAAA 
CAGACAAAAA CTCCTGAAAT AGTACGTGTC TATGAGAAAA TAAAACCCAG TATATGGGTT 
TACAATGGAG TCTTCAATTT AGTTGATGCG TGGATAGAAA CATTAAACAA CCGCCAGGTT 
TTTAAATTTA AACTTGAAAT TACCTCAGAA CCAATATCGA ACATTATCAA ACCTAACCTT 
GATTCTGACA ATAGAGCAAT ACCACCCGAA ATAAAACGGG CAGTTTGGGC AAGAGACCAA 
GGCAAATGCA TAAAATGCGG AATTTCCTCA AACCTCCATT TTGACCATAT TATCCCTTAC 
TCCAAGGGAG GATCTTCATT AGTGGCTGAA AACATTCAGT TACTCTGCGC TAGTTGTAAT 
CTCAGCAAGC ATGCTAATAT TGAATAA
 
Protein sequence
MIPGEIISYL DMCQAEGINL QKGMNFKLRN GNNIILMSVR DGAPYADRFE DEGKVLIYEG 
HDINRTHPSI NPKNFDQPMY TQGNKLTANG LFYNAAQKAK QTKTPEIVRV YEKIKPSIWV 
YNGVFNLVDA WIETLNNRQV FKFKLEITSE PISNIIKPNL DSDNRAIPPE IKRAVWARDQ 
GKCIKCGISS NLHFDHIIPY SKGGSSLVAE NIQLLCASCN LSKHANIE