| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_0806 |
|---|
| Symbol | |
|---|
| ID | 5132155 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. BAV1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009455 |
|---|
| Strand | + |
|---|
| Start bp | 794243 |
|---|
| End bp | 795325 |
|---|
| Gene Length | 1083 bp |
|---|
| Protein Length | 360 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640529723 |
|---|
| Product | twitching motility protein |
|---|
| Protein accession | YP_001214267 |
|---|
| Protein GI | 147669449 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
|---|
| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGCAG ACGAATTATT AAAAATAGCG GTAGACAAAA AAGCCTCAGA CTTGCATCTT
CGGGTGCCGA ACCCTCCTGT ACTCAGAATA GATGGCGCAC TTCAACCTCA GACTGACTGG
CCGGTTATGT ACAACAAGGC CATTGAACAG ATACTGGAAG AGATAACCAC GCCTGAACAG
CGCGAAGTAT TTTATGCTGA AAAAGAATTG GATTTCGCCT ACAGCGTACC CGGAGTAGCC
CGTTTCAGGG TAAATGTAAT GAGACAACGC GGCTCATTAA GCATTGCTTT CCGCCAGGTG
CCCTTTCAGA TACGAAGTAT AGATGAACTG GGCGTACCTC AAATCTGCAA AGAGCTTATT
CTGAAGCCGC GCGGGCTTAT TCTCATAACC GGACCTACCG GCAGCGGTAA ATCCACCACC
ATGGCTGCTA TGGTAGATCA CCTGAACCGC ACAGATGCAC GTAATATCAT TACCATAGAA
GACCCCATTG AATACCTATA TACCAATAAC CGCTGTATCA TTGCCCAGAG AGATTTGGGT
GACGATACCA AATCTTTTTC CACCGCTCTG AAACACGCCT TGCGGCATGA CCCTGATGTA
ATACTGGTGG GTGAAATGCG TGATCTGGAG ACTATTTCTA CGGCTATCAG CGCAGCCGAA
ACAGGCCATC TGGTAGTGGG CACACTGCAT ACTACAGACG CCCCCCAGAC TATAGACCGT
CTGATAGATA TATTCCCGCC TGACCAGCAG CAACAAATAC GCATGCAGTT ATCCTTGGTT
ATTGAAGCAG TACTGGTGCA AACGCTGCTG CCCAAACTTG GAGGCAAAGG GCGGGTAGCA
GCGTTTGAAA TAATGGTGGC CAATACCGCC GTTCGCAACC TGATACGGGA TAAAAAAGCT
CATGAACTGC ATAACGTAAT GCAGCTAAGT GTCAAAGACG GGATGCAGAC ACTAGACCAA
TCTTTGGCAA ATTTGGTACG TCAAAACATG GTTTCGATGG AAGAAGCCTT ACTAAAAAGC
AGTTACCCTG AACGGTTACA AAAACTGCTC CAGTACCAGC AGACCAAGCA GAATCCATTT
TAA
|
|---|
| Protein sequence | MRADELLKIA VDKKASDLHL RVPNPPVLRI DGALQPQTDW PVMYNKAIEQ ILEEITTPEQ
REVFYAEKEL DFAYSVPGVA RFRVNVMRQR GSLSIAFRQV PFQIRSIDEL GVPQICKELI
LKPRGLILIT GPTGSGKSTT MAAMVDHLNR TDARNIITIE DPIEYLYTNN RCIIAQRDLG
DDTKSFSTAL KHALRHDPDV ILVGEMRDLE TISTAISAAE TGHLVVGTLH TTDAPQTIDR
LIDIFPPDQQ QQIRMQLSLV IEAVLVQTLL PKLGGKGRVA AFEIMVANTA VRNLIRDKKA
HELHNVMQLS VKDGMQTLDQ SLANLVRQNM VSMEEALLKS SYPERLQKLL QYQQTKQNPF
|
|---|
| |