| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_0296 |
|---|
| Symbol | |
|---|
| ID | 5132361 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. BAV1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009455 |
|---|
| Strand | + |
|---|
| Start bp | 305957 |
|---|
| End bp | 307495 |
|---|
| Gene Length | 1539 bp |
|---|
| Protein Length | 512 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640529195 |
|---|
| Product | reductive dehalogenase |
|---|
| Protein accession | YP_001213760 |
|---|
| Protein GI | 147668942 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1600] Uncharacterized Fe-S protein |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR02486] reductive dehalogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0794176 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAATGA ATATTTATCA TTCAACTATT AGCAGACGTA ATTTCATGAA GGGGTTGGGA
TTGAGTGGTG CTGCTTTGGG TGCTGCAACA GCTTCAGCAC CAGTGTTTCA TGATTTGGAT
GAAATGATTA CATCTGTACC TAAATCTACA ACTCAACATG CTTGGTGGGT AAAAGAAAGA
GACTATGAGG ATATTACTAC GCCTGTTGAT TGGACTGTTT GGTCACGACG TGAGGCCTTA
AAGAATCCGA TGCCGCCCGG TTTTGCCGGG AATTATGTGC CTAAAGAACA GGCCAGATTA
CAGAGCTTTC GTAATGAAAT TAAAAGAGGT ATAACTGAAA AAATTCCCGG TGCAACTTTA
CGTGATTGGG CTCTTTCGGA AGCTGGGCGG AGCAATACCA CCTCTTCGTC ATGGATGGGG
CTTGATGTTA AACCCCCATG GTTATGGGGT GAAGCCTCTG CTTTACCGGT TGAACCTTGG
CCAGAAGGTG CACCCAAATG GGAATCTACT CCGGAAGATA ATCTTAGAAC GGTTCAGGCT
GCCGGACACT ATTTCGGTAC GCCTCAGGTA GGCGCCATGG AAATCAATGA ACATATGATT
CGTATGTTCG ATAAAGATGG TTTTGAACAT AACTATAGTG CAAGTTATGA GAAACCCATG
ATGCGATTCC GCTCTGAGTG GTTTGAAGAT ATTCCGGTTG GTTTTCAGGA TGCCAATCAG
GTAAAACATA TTCCAAAATC ATGTAAATGG GCGGTTACTT ATATTGCCGC CAAAGAAAAT
GCACTGCAGA TGACTTATGG CATGCGTACT GGTGATCCTC AAGATCCGTG GTATAAGCGC
ATCTTTCCTT TGGGTTATAC AACAGGAGAG GCTTATTCCA AAGCTGATTA TGTTAAAGTC
CAATTTATGA AATTCATAAA AATGTTGGGT TATCAAACTT ATTATATGGG TTTAGCCGGT
GGTACAAGTT CAAATAGTCC TGCAGGAATT TTCTCAGGTT TGGCAGAAGA GGCTCGCCCT
GCGCTGGCCT GTTCACCTTA TTATGGTAAT GCGGTACGTC ATATTGGAAT CATTGTTACC
GATATGCCTC TGAGTCCCAC TAAGCCTATT GATGCCGGTA TTGTTAATTT CTGCAAAGTA
TGCAAAAAAT GTGCGGAGAC TTGCCCTTCC GGCGCTATTA GTATGGAAAC TGAACAACAA
TGGGAACCTG CTTGCACGGG GAATAATCCC GGTCGAAAAA CTTGGTATTT GGACTGGTTT
AAATGTCGTC CATGGGGTTC CCCATATTAT TGTCCCAATT GTCAAACAGT CTGCCCATTT
AACAATCCTA ACAAAGCAAT TATCCATAAC GCTGTACGTA TGACGGCTGC CACCACTCCA
ATATTTAACA GCTTCTTTTC ATCTTTGGAT AAGAGCTTTG GTTATGCTCA CCAGCGTTCG
GACGAAGAGC GACTTAACTG GTGGTACAGG GATCTTAATA CATGGCAATA TGATGATGTT
TTTGGTATGG GCACAAAAGA TCCAAAATCT TGGTTATGA
|
|---|
| Protein sequence | MEMNIYHSTI SRRNFMKGLG LSGAALGAAT ASAPVFHDLD EMITSVPKST TQHAWWVKER
DYEDITTPVD WTVWSRREAL KNPMPPGFAG NYVPKEQARL QSFRNEIKRG ITEKIPGATL
RDWALSEAGR SNTTSSSWMG LDVKPPWLWG EASALPVEPW PEGAPKWEST PEDNLRTVQA
AGHYFGTPQV GAMEINEHMI RMFDKDGFEH NYSASYEKPM MRFRSEWFED IPVGFQDANQ
VKHIPKSCKW AVTYIAAKEN ALQMTYGMRT GDPQDPWYKR IFPLGYTTGE AYSKADYVKV
QFMKFIKMLG YQTYYMGLAG GTSSNSPAGI FSGLAEEARP ALACSPYYGN AVRHIGIIVT
DMPLSPTKPI DAGIVNFCKV CKKCAETCPS GAISMETEQQ WEPACTGNNP GRKTWYLDWF
KCRPWGSPYY CPNCQTVCPF NNPNKAIIHN AVRMTAATTP IFNSFFSSLD KSFGYAHQRS
DEERLNWWYR DLNTWQYDDV FGMGTKDPKS WL
|
|---|
| |