| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ddes_0979 |
|---|
| Symbol | |
|---|
| ID | 7284659 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011883 |
|---|
| Strand | - |
|---|
| Start bp | 1143200 |
|---|
| End bp | 1146721 |
|---|
| Gene Length | 3522 bp |
|---|
| Protein Length | 1173 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 643581779 |
|---|
| Product | UvrD/REP helicase |
|---|
| Protein accession | YP_002479564 |
|---|
| Protein GI | 220904252 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.156033 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCCAGC CATACAGCAA TATCCTGGTT GTGGCCCCGG CCGCAATCCA CATTGCGACA
TATCGGAGCC AAACGGCCCG GTGCGAAAAC ACGAGAATAT TCATGCAGCA TCTGCGTCAG
GTCAAAGCCT CTGCCGGATC CGGAAAAACA TATGAACTAA CACGCTGTTT CTTACAGCGT
CTTGTGGCTT GCGGTGCTCC CGGCACAGCT GCGTCACCGG CCTGCGCCCT GAGCAGCAGC
GGCCCCTGCG GTTGGGGCGA CATACTGGCT GTCACATTTA CCAATGCCGC CGCCACCGAA
ATGCGTGAAC GCGTCATCCG GCAACTTAAA AGCGCGGCCC TGGGGCAGCC CATGCAAGGA
CTGGAGCTTG ATTCCGCTTC AGCCGGGCGC TGGGTGGACG CCATCATGCG TGACATGAGC
GCGCTGAACA TACGCACCAT TGACAGCCTG CTGCACCTTA TCGTGCGCGC AGCCGCCCTG
GATCTTCGCC TGCACCCGGA CTTTCAGCCC GTCTTTGCCA CCGAAGAAGC ACTCACGCCC
TATCTGGACC TCCTGCTTGA AAAAGCCTGG CAAGGGGATG AAAATATGCG TGGCCTTTTG
CGGCAGGTTT GCCGGGCCAT GGTTCACCAC GGGCAAAGCA AGGGTTTTCT GGCAGGAGAA
AAGCTGCTGT ATCAATTGCG CCCGCTTCTG GACAGCGCCC TGCTGGGGCG CTACGGCGAC
CTCTCTTCTT ATGAAGAACT TGAGCAAAAG CTGATTGCCC TCAACCGGAC CGCCAGACAG
GCTGCCGGCC ACCTATTGCA TGCAGCCTCA GGCGCGCGGC TGCCCTGGCT GTCCAATGCG
GAAAAGGCTG TCACTGCCTG GGCTGATGGC GAATGTAAGA ACTCGGCTTT TTTAACCAAA
GATGCCGCAT CCCAACTTTT TAAAAAAGGC GCTGCTGTAG GCCCAGAAGT GGAGCACGCC
TATACTGCTT TTTCTCTGGC CGCCCAGGCC TGCATGCAGG ACGGGCAACT TCTGCGGCAG
GCCCTGCGCC TTGAGCCGTC CATACGTATG GCGCGTATTC TGGCTGACGC CTTTCTGCAC
AATCAGGAGC AGGAGGGCAC GCTCCCCGGT CTGCTTGTTC CCCATATGGC GCATGAGGTC
CTGTCCGGCG ATCACGGCGT GCCGGAAACG CTCTGCCGCC TTGGCGCGCG CCTTACCCAC
TACCTGGTGG ACGAGTTTCA GGATACCAGC CAGGAACAGT GGCGGGCGCT GCGCCCACTG
GTGGAGGAAG CGCTGTCGCG CGGGGGGTCC CTGACCTGGG TGGGCGATGT AAAGCAGTCC
ATCTACGGCT GGCGGGACGG CGATCCGGAA CTTTTTGACG GAATCCTTGA AGATAAGGGG
CTTGCCGCCG TGGCCGCCAC CACGGCCCGC GACAGCCTGC CGTTCAACTG GCGCAGCCGC
CGTCAGGTGG TTGAGCACAA CAATGCCCTT TTTTCCCTTC TGGAACAGGC AGATACGGCC
AGAGCCGTCA TGAGCGCCCT TCTGCCGGGC GACATGCCCG AAGACCTGTC TGCGGAAATA
ATGGACGCCT CTGTAAAAAG CCTGCTCGGC GCTTTTGCCG GAACCCGGCA GGAATGCCCG
GAGCACACAC CCGACGGCGG CCTTGTGCAG GTGGAAGATA TTGCGGCAGA CTCATCCGAG
ATGCTGCGCG AAGCCGTTTT TGACCGTCTG GGCCGCATCC TGCTTGATGA TGTGGCCCCG
CAGCGCCCCT GGTCGGACGT GCTCGTGCTG GTACGCAGCA ATGACGGAGC GGCACGCATC
GCGGACCATC TGGTGCGGCT GGGGATTCCG GTCATTACCG AAAACAGCCT GCTGCTCTCG
GCCCATCCTC TCATTGTCCA GACCGTGGCC CTGCTGGCCT TTCTTGACAG CCCAGATGAC
AATATCGCCC TGCTGACCGT CCTGACCGGA GAGATTTTTC ACGGCCATCC CGAGGCTGCC
GAACTGGCGC ATACCGACTT GCACGGCTGG TGCGCCCGCC AGAAAAAAGG CTTTCTGTAC
CAGAGTTTCC GCCAGCGCTG GCCGCATGTA TGGCAAAGCC TGCTGGCGCC TTTTTTCAGC
CAGTCCGGCC TGATGACGCC CTATGATACT GTGCTTGAAT GGTATGCGCG CCTTCAGGTG
GAACAGCGTT TTCCCGAAGC GGCAACCTTT TTGCGCCGCT TTATGGAGGT ACTGCACAGC
GCTGAAGAAA AGGGACTTGC GACGCTCTCT ACCTTTCTGG AGCACTGGAA TGCCAAAAGC
CAGGAAGAAA AGGTCCCCAT GCCGGAAAAC ATGAATGCCG TGCGGGTCAT GACCGTGCAC
AAATCCAAGG GACTTGAGGC CCCGGTGGTT TTCGTCCCCT TTACCGCGCT GAACATTTCC
GCCTCTGACA AGCCGCTGCG CACAAACCGC CAGGGGCTGA GCATGATGGT GCGCAATCAG
AAAGCGTTGG GACGCCCCTA CTACGAGGAT CTGGCCCGTC AGGCCAGAGA GAGCCTGAAC
CTGCTCTACG TTGCCTTTAC CCGCGCAAGA GACGCCCTGT ATATTTTTCG CACTTCGGCC
AAAAGACAGT CGCCGGTACT TGCAGGACTG GATATTCTCT GGGAACGCGC CGGACTGCAG
CCACCCTATG CTCTGGGCAG TCTGCCCACG GCCGCTGACA CGTCACGGGG CAGCCATGCG
CATGCCGCTA TCGGGGCAGA TGTGGATACA GACTGCGCAT TGCCAGCCAG CCCCGCTGGC
GGCCGCCCTG CAAACCCGGC CCCAGCCCCG ACGCCCGGCT TGCAGCATGT GGACGGCACA
GCCGGCGCGC CGGGAATTTT ACCCGCTGCC GCACCTGCCA TCTCCCGCAC CCCTTCCGTC
GGTGCAGATC AGGAATACGA CGCTTTTTCC CCGGATACGG CTGATGCTGC TGAAGACTGG
CGCCCCATGC AGTGGCTGCC ACGCCTGAAG ATTTTTCGCA ATCCCATGGC CGCTTTTGAT
TTTCAGCCTG AAGACAGGGG TAATCTGCTG CATTTCTGCC TGGAACACCT GCGCCTTACC
GGCAGCCCGC GTGAAGACGC CCAGGCGGCC CTGAACTTCG GCCTGCGGCA TTATCCGTTG
CCTGTTCCCG ATGATGCGGC CCTGCGCCAC GGCGCATTTG AAGCCTTGCA CTGGTTTGCA
AGCCAGCCTC AAAGCGCGCG GTGGCTCGCC AACGGCTGGC CCGAGCATTC CATAATGACC
GCCCAGGGCC AGCTTTTGCG CATGGACCTG CTGGTCCACG AACCTTGGGG GCGGCTGGTC
ATTGATTATA AAAGCGGGCA GCCCGAAGCC GCGCACGTGG AGCAGGTACG CAGATATCTT
GGCGGCCTGC TTCTGGAGCG CGAAAACGCC AATACCCCCG TCATGGGCCT GCTGGTCTAT
CTTGACCAGC GCCGTTTTCG CCTGGTGACG CCGGACGGCG CATCGGAACT GACCCCTCAC
TGCGACGGTC TTTTGCCCGC AGAGGATTAC CTGCATGAGT AG
|
|---|
| Protein sequence | MGQPYSNILV VAPAAIHIAT YRSQTARCEN TRIFMQHLRQ VKASAGSGKT YELTRCFLQR
LVACGAPGTA ASPACALSSS GPCGWGDILA VTFTNAAATE MRERVIRQLK SAALGQPMQG
LELDSASAGR WVDAIMRDMS ALNIRTIDSL LHLIVRAAAL DLRLHPDFQP VFATEEALTP
YLDLLLEKAW QGDENMRGLL RQVCRAMVHH GQSKGFLAGE KLLYQLRPLL DSALLGRYGD
LSSYEELEQK LIALNRTARQ AAGHLLHAAS GARLPWLSNA EKAVTAWADG ECKNSAFLTK
DAASQLFKKG AAVGPEVEHA YTAFSLAAQA CMQDGQLLRQ ALRLEPSIRM ARILADAFLH
NQEQEGTLPG LLVPHMAHEV LSGDHGVPET LCRLGARLTH YLVDEFQDTS QEQWRALRPL
VEEALSRGGS LTWVGDVKQS IYGWRDGDPE LFDGILEDKG LAAVAATTAR DSLPFNWRSR
RQVVEHNNAL FSLLEQADTA RAVMSALLPG DMPEDLSAEI MDASVKSLLG AFAGTRQECP
EHTPDGGLVQ VEDIAADSSE MLREAVFDRL GRILLDDVAP QRPWSDVLVL VRSNDGAARI
ADHLVRLGIP VITENSLLLS AHPLIVQTVA LLAFLDSPDD NIALLTVLTG EIFHGHPEAA
ELAHTDLHGW CARQKKGFLY QSFRQRWPHV WQSLLAPFFS QSGLMTPYDT VLEWYARLQV
EQRFPEAATF LRRFMEVLHS AEEKGLATLS TFLEHWNAKS QEEKVPMPEN MNAVRVMTVH
KSKGLEAPVV FVPFTALNIS ASDKPLRTNR QGLSMMVRNQ KALGRPYYED LARQARESLN
LLYVAFTRAR DALYIFRTSA KRQSPVLAGL DILWERAGLQ PPYALGSLPT AADTSRGSHA
HAAIGADVDT DCALPASPAG GRPANPAPAP TPGLQHVDGT AGAPGILPAA APAISRTPSV
GADQEYDAFS PDTADAAEDW RPMQWLPRLK IFRNPMAAFD FQPEDRGNLL HFCLEHLRLT
GSPREDAQAA LNFGLRHYPL PVPDDAALRH GAFEALHWFA SQPQSARWLA NGWPEHSIMT
AQGQLLRMDL LVHEPWGRLV IDYKSGQPEA AHVEQVRRYL GGLLLERENA NTPVMGLLVY
LDQRRFRLVT PDGASELTPH CDGLLPAEDY LHE
|
|---|
| |