Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dde_2039 |
Symbol | |
ID | 3757047 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
Kingdom | Bacteria |
Replicon accession | NC_007519 |
Strand | - |
Start bp | 2080135 |
End bp | 2083593 |
Gene Length | 3459 bp |
Protein Length | 1152 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637782927 |
Product | transcription-repair coupling factor |
Protein accession | YP_388531 |
Protein GI | 78357082 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.583772 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCAGTTTG AAGAAATAGC GAAAAGGCTG GGCGGCGGTG CGGCGCACAG CCTGCATGTG GCCCGCAGCG GCCCTGCGAC CCGTGCCAGA CTGGCAAAGG AACTGATTGA TCAGGGCCGG AGTGTTGTGC TGGTTGCCCG CAATGCTGAT GAGCTGGCAG AGCTCAGGGC GCTGGCAACG CTCTTTTCGC CGGACGAATC GTCGGAGGAC GTGAGTCTGA CGGTACCCGC GTGGGAGCGT CGCTGGATTA TTATTCCCCA GCATCCGGCG GGCAGCCCAG GGCGTACTGC GTGGGCAGCA CGCATGGCCA GCCTGTATGC GCTCAACAGG CGGCACATGC CGCAGGCGGT CATAGTATCG CTTGATAATT TCATTCCCAA GCTTCCTCCT CCTTCCCTTT TTGATAAGCA TCAGCTGGTT CTTTCGACCG GCGAGGACAT GTCCCCCGGG CTGGTCATGG AACAGGCTGT GGAGTGGGGA TACACGCGCA CCGCATATGT CACCCAGCCC GGAGAAATAG CGTTGCGCGG GGATATTCTG GATATTTTTC CGCCGGGCTA TGCCAAACCG GTACGGCTGG ACTTTTTCGG CGACACTCTG GAAGAAATCC GTCTTTTTGA TCCTTCAAGC CAGAGATCAA AAGGCAATCT TGCGGAAGTG ACTCTTATTC CCACTGCGCC GGTGGTGCTG GAAGGCGCAC CCCGTGCCGA GGCCCGCAGC TTCTGGCAGC GGGCTGCCGA GTCCGGCCTG CTGCCGGACG GTGCGCCTGC AGCGCTTGAT GTGGCCGCAG GAGAGGCCCG TGCAACGCTA CTGCCGGGGG TATACTATCA GGATGCCGTT TTTCTGGAGC GCTGGCTGCC GCCCGATGCG GTCTATATTC TGCCTGCTGA AAGGGATGTG GCCGAAGCAC TCAAGCAGTC TGCCAGAACA TGGGACGATT TTTCCGACCA GCAGGAGCGG GAGTACGGCA TTCATCAGCC TGCGGCCATG ACCATCCGTG AGGCGGAAGA CGTCACCGCT TTGTTCGGGC AGACAGTGCG TGTGTACTTT GAAGAACTGG TCATGGGAGT GGAGCAGAAG GGAGAAAACC TGCCGGAACG TGGGTATGAG GTCTTTCAGG ATCTTTTTTA CGAAAAAGAG CAGAGCGACC GGCCGTGGCA GACACTTATT GAAGCTCTCA AGGAATGGAG CCGCACCAGA CGCCAGACTG TTCTGAGTTT CGGTTCGGCG CGCAGCAGGG CCAAATTTCT TTCACTGGCC CAGCAGGACG GCATCAGTCC GTATCTGCGG TATGACAAAA GCACCGCTGG TGTTTTTGCT CTTGTGTCGG CTTTCCGCAA GGGGGCTGAA CTGCAGTGGG ATAACTCGGT TGTGCTGGGC GAAGATGTGC TGCAGCCGCG TACACGGCAG CAGAGGGTGC GGTCCGGCGC TTTTGCGGGG TTGAAATCCT ACGACGACCT TGAGGCGGGG GCCATGCTGG TTCACCGCGA TTACGGCGTC GCCCGTTTCG AGGGCTTGCT GCGAATGGAT CTGGGGGGCG TCTCAAACGA TTACCTTCTG CTCCGTTATG CCGGTGATGA CAAGCTGTAC CTGCCTGTGG ACAGACTTTC TCTGGTTCAG CGGTTCAAAG GGCCTGACGG TACGGCACCT TCGCTGGACA AGCTGGGCGG TGCCGGCTGG AGCGCCAGCA AGTCCAAAGC CCGTAAAGCC ATCGAGAGGA TCGCGCATGA TCTGGTGGAG ATGTATGCGT GGCGCAAGGT TGCAAAAGGA TACCGTTATT CTCCCGTAAA CGACATGTAC CGCGAGTTCG AGGCATCGTT CGGGTTTGAG GAGACTCCTG ATCAGGCGCG GGCCATCGAG GACGTTCTTG ATGATATGGA ACGTGCTGAA CCCATGGACA GACTTGTATG CGGCGATGTG GGCTTCGGCA AGACGGAGGT CGCACTGCGG GCGGCATTCC GCGCCGCCAT GGACGGAAAA CAGGTGGCTC TGCTGTGCCC CACCACCGTG CTGGCGGAAC AGCATTTCCA GACATTCCGG AGCCGCCTCG GGCAGTTTCC CGTCAATGTG GGTATGCTCA GCCGGTTTGT TTCACGTCAG CGTCAGAAGG AAGTGCTGGC CGCGTGTGAA CGCGGGCAGA TTGACATTCT GATCGGTACG CACAGGATTT TGTCTGATGA TGTCATCCTG CCGAATCTGA GCCTGCTTAT CCTGGATGAA GAACAGCGGT TCGGCGTGCG GCATAAGGAA CGCCTGAAGA AAATGCGCAG GAACGTGGAT GTGCTTACCC TGACTGCAAC CCCTATTCCG CGGACTCTGC AGCTGTCCAT GTCGGGCATC CGTGAGCTGA GCGTCATTGA AACGGCGCCG CCGGAGCGCA AGCCCGTAAA GACCGCTCTC ATAGACAGGG ACCCTGATAT TCTGCGCGAG GTCCTGCTGC GCGAACTGCA GCGCGAGGGG CAGGTTTTCT GGGTGCACAA CAGGGTGCAG GGACTTGAGC GTGTGGCCGA GTATGTCCGG TCGCTTGTTC CTGACGCCCG CGTGGGTATG GCCCACGGCC AGATGTCGGA AAAGGCGCTG GAAGAAACCA TGCACAAGTT CTGGCATGCG GAACTGGACG TTCTTGTCTG TACCGCCATT GTGGAATCGG GGCTGGATTT TCCCCGTGCC AACACGCTTG TGGTGGATCA GGCGCAGATG TTCGGTCTGG GGCAGCTGTA TCAGTTGCGC GGCAGGGTGG GCCGCTCCGA CCGGCAGGCT CATGCTGTCT TTGTTGTGCC GGATGTGGAC GGTGTGCCGG AACTTGCACG CAAGCGTTTG AAAATAATAC TTGAAATGGA TTATCTGGGG GCCGGTTTTC AGGTCGCCAT GGAAGACCTG CGTCTGCGTG GGGCCGGTAA TATTCTTGGC GAGGTGCAGT CCGGACACAT GGTCAAGATC GGTCTGGACA TGTACCTTGA AATGCTTGAA GAAGAAGTGG CCCGCCTGAA GGGTGAGCCG GTGCGCGAAG ATGTGCAGAC CGAGCTTAAC ATAGGCATTA CGGCTCATAT TCCCGAAGGC TATATGGACG ATGGAAGAGA GCGTCTGAAG TATTACAAGG CTCTTTCTTC GGCAGCGGAC GGTGCTGCGC AGGAAAGCAT CGAGCTGGAA ATGCGGGACA GGTTCGGTCA TTTTCCGCAG GAGCTTCAGG CTTTTCTGGG AATACTGCGC CTCAAGCGTT ATCTGGGTAC TCTTGATGTG CAGAAGGCTG ATATTTTTGC GGATAAGGTG AGGCTGACCT GGGCGGAAAA CGCCGGAGCG GTTTCTCCTG CCACACTGGT GGGCTGGGTT GCAGAAAGGG CAGGCAGGGC ACGTCTGGTG CCGCCTGCCA TCATGGAAAT CCAGCTGCCG GAAGGTTCCG CTTTTGAAGA CCGGCTTTCT GCCCTGCAGT CGGAACTTGA ATTGCTGCGG GCACAGTAG
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Protein sequence | MQFEEIAKRL GGGAAHSLHV ARSGPATRAR LAKELIDQGR SVVLVARNAD ELAELRALAT LFSPDESSED VSLTVPAWER RWIIIPQHPA GSPGRTAWAA RMASLYALNR RHMPQAVIVS LDNFIPKLPP PSLFDKHQLV LSTGEDMSPG LVMEQAVEWG YTRTAYVTQP GEIALRGDIL DIFPPGYAKP VRLDFFGDTL EEIRLFDPSS QRSKGNLAEV TLIPTAPVVL EGAPRAEARS FWQRAAESGL LPDGAPAALD VAAGEARATL LPGVYYQDAV FLERWLPPDA VYILPAERDV AEALKQSART WDDFSDQQER EYGIHQPAAM TIREAEDVTA LFGQTVRVYF EELVMGVEQK GENLPERGYE VFQDLFYEKE QSDRPWQTLI EALKEWSRTR RQTVLSFGSA RSRAKFLSLA QQDGISPYLR YDKSTAGVFA LVSAFRKGAE LQWDNSVVLG EDVLQPRTRQ QRVRSGAFAG LKSYDDLEAG AMLVHRDYGV ARFEGLLRMD LGGVSNDYLL LRYAGDDKLY LPVDRLSLVQ RFKGPDGTAP SLDKLGGAGW SASKSKARKA IERIAHDLVE MYAWRKVAKG YRYSPVNDMY REFEASFGFE ETPDQARAIE DVLDDMERAE PMDRLVCGDV GFGKTEVALR AAFRAAMDGK QVALLCPTTV LAEQHFQTFR SRLGQFPVNV GMLSRFVSRQ RQKEVLAACE RGQIDILIGT HRILSDDVIL PNLSLLILDE EQRFGVRHKE RLKKMRRNVD VLTLTATPIP RTLQLSMSGI RELSVIETAP PERKPVKTAL IDRDPDILRE VLLRELQREG QVFWVHNRVQ GLERVAEYVR SLVPDARVGM AHGQMSEKAL EETMHKFWHA ELDVLVCTAI VESGLDFPRA NTLVVDQAQM FGLGQLYQLR GRVGRSDRQA HAVFVVPDVD GVPELARKRL KIILEMDYLG AGFQVAMEDL RLRGAGNILG EVQSGHMVKI GLDMYLEMLE EEVARLKGEP VREDVQTELN IGITAHIPEG YMDDGRERLK YYKALSSAAD GAAQESIELE MRDRFGHFPQ ELQAFLGILR LKRYLGTLDV QKADIFADKV RLTWAENAGA VSPATLVGWV AERAGRARLV PPAIMEIQLP EGSAFEDRLS ALQSELELLR AQ
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