Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dd1591_2818 |
Symbol | |
ID | 8120514 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dickeya zeae Ech1591 |
Kingdom | Bacteria |
Replicon accession | NC_012912 |
Strand | - |
Start bp | 3201865 |
End bp | 3206904 |
Gene Length | 5040 bp |
Protein Length | 1679 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 644853188 |
Product | YD repeat protein |
Protein accession | YP_003005120 |
Protein GI | 251790399 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3209] Rhs family protein |
TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGTGAGA ATAAAAAAGC GACGCTGATA TCGAGCGAAG ACGCCGCCAA TCAAACCTTT TCCACCGATA ACAAAATCTC CGGCGGGTGT GCCCAATGCG GCTGCGAAGT GCTGATTTAC TACCATTACG ACTCGGGAAA ACCGGTGCCG AATGCGCCGT TTGTGTTGAC TGACAGCAAC AAGACCGAGA TCCACGGCAA AACCGATGCC AACGGGCTGT GCCAAATCTA CGACATGGGC TGCGGCACCT TCGAACTGAT GCTGGAGGAA GGCTCCGATG ATTTCACCCC CCGTGAAACC GTAGAAAACA ACCCGGTATT ACAGTCGAAC CCGGCGTATG CCACGCTGGC GGGTGAGTAT TTCACGCTGT TTCTATTGCT GCGCAAACAG GGCCTGGTGA ACTATGACGC CGACGACAGC AGCGATCGCC ATGTCGATGT GGATGGCGCC GGGCTGTTTA CCTCTATCCC TCAAGAGTAC CGCAAATCCT ATGACCGCTT CTGGGAGCTG GATAAACGGG TCAATCGCGG CGGCCGCGAG CTGAAGCGGG CGGTCAATAA AATCCACCAC AGCCTGGCGG CGGAAGTGGC GGACAAAGGC GGGGAGAGCA ACGCCGCGCT GATGCTGTTT TGTGAAATCG CGCTGGGGTT TATTCCGGTG GTCGGGCAGG CCATGGATGT GTACGCGATA GGCGAGTGGA GCTGGCGGTC GTATCAAGAA CCCGCCAGGC TGGAAGACCC GCTGCATATC GCCGAAGGCG CGCTCTGCGC CATTGGCGTG ATCCCCGGAC TGGGGGATGC CTTGAAGGTC AGCGGACGGG CGATTATCCG TGCGCTCAAA GAGGCCACCC CCAAAGAGCT GCAATTTGCC ATCAAAACTA TCCGCAGCCT GTCGGACGGT AATCTGGTCA AAGGGCTGAC CCAATTGCAG GCCGAGCTGC GACATTACGG CGCGCAGGCC AAAGATCTGT TGCTGAAAAT TCATGCGGCG CTCAAACAGG TACTGGCCGA GTCAGCGCTG AAGAACAACT GGATCGTATC GATGATGAAA GACAGCTTCA GCGCCATGAT CACCGCGCTG GAAAAGCTGA TTGCCAAATA TGACGGCGCG TTGGCCGACA TCGAATCCCA ATTCAAAGTA TTCATCGACA AGGTGGTGAC CCGCGTCAGC GGGAGTGCGC GGAAGAAGGG CAGCATTGCC CATGACGCCG CCGCGTCGAA AGCGCCGTCA CCGGCGGAAA GCCCGTCGGC CAAACCCGCC GCGCAAAGCG AGAGCCCGCT CGCGGCGGGG GAGAAAACGG CTGGGATGCA GGCAGGCGGG GGCAACAACG GAAAAGCGAC GTCGGCCAAA ACCGACGAAA AGAAAAACAC TCCCCCGGCG GCAAAACCGA AAAACGCCGT CGGCAAGGAA AAAACACGTC AGTCATCGGA AGGGACGGAA GACATCACCA CCGGGAGCAA CAAAGGCGAA CAGCCGGATA ATTCCCACCA ACAGGCGGCC GCCGGGGAAA AAGATAAAAC GTGCAACGCC AACAGCAAAC ACTGCCAGAA TGAGGGCGAG CCGGTGGATA TGGCGACCGG CTATGTGGTG GACTGGCGTA CCGATTTTAC GCAGAGCGGC CTGCTGCCGC TGGCGATGAA ACGTTATTAC CGCTCGGGCG GCGAACGCCG GCCGGGCCTC TTGGGGGCGC TGTGGCGCAG CAACTGGGAC ATGAGCCTGA CGCTGGACAA CGGTGTCGCC ACGCTGACGG ACGGTGAGTT CAACCAGGCG GTCTTTGTCC TGCCCGAAGA GGGGGCGCAG AGCCGGGCGC CGTCCAACCC GTCATGGCGG TTGTGCCGCC AGCAGGGGCA CCTGGTGTTG CAGCACGTCG ACGGGCTGCG TTACCGCTTC GAGCACGCGT TGGGGCTGCA CCTGTGCCTG ACCGCCATCG AAGACCGGGC GGGCCATCGC CTCACCTTCT TGTGGGACCG CGCCGACCTG TGCTGGATTA GCCTGCCGGA CGGGCGTCTG GTCCACGTGG AAACGCAGCG GCGGCGGATA ACCACACTGA CGCTGTGCGA CGAGCACCGC CAGCCGCTGA AAACGCTGGT CCGCTATCAG TATGATGCAC AAGGCTACCT GCTGAACGTG CGGGCGGGGG AAGGGCGCAA TTTCGATTAT CAGTACGCGC CGCAGGGCTG GCTGCTGCGC TGGTCGGATT TGGCGCACAC CTGGGTTGAG CACGAGTACG ACGAACAGGG GCGCTCGCGG CGTGACCGCA CGGCAGACGG GTTCTGGCCG GGCGAATTTC GTTACGACGA CGACGCCTTC ACCAGCCAGT ACCACAGCGG TTTTGGCGGC GTCACCACCT ATGTGCGCGA TGCGCGCAAC AACATTCTGC TGCGCCGGGA GCCGGATGGC GGGGAATACC GCTTCGAGTG GGTGGACAAC CAGCTGGCGG CGGAGAGTGA CCCGCTGGGC GGGCGCACCG AATATCAGCG CAACGACTGG GGACAGGTGA CGGCGGTGAC CCTGCCGGAC GGGGCGACGC ATCGCTATGA GTACGATGAT GACGGCCAGT TGCTGGCTTA TATCGACCCG CTGGGCAGTG CGTGGCGTTA TACCCGCGAT GCGGCCGGGC GGGTGGACAC GGCGAGCGAC CCGGAAGGGC GGACGTGGCA GCACCGCTAT TCGCCGCAGG GGTTGTTATC CGGCGTGACC GGGCCGGACG GCCGGGTGCA GCGTTATCAC TACAACCGTC GCGGGCTGCT GGAGCGTCTG GAGGCGGAAG GCACCTCGCC GGTGACCTTT TTCTACGACG GCCATGACCG GCTGACGGAG CGGCATATTG CGCATGAACA GGGCGTGCAG GTGCGGCGGT GGGTGTACGA AGGCGGTCGT GAGACGCCGG AGAAGGTGAT TTACGAAGAC GGCAGCGAAA CCCGGTTTGG TTACGACGGT GAAGGGAACC TGACGTCGGT GACGGATGCG CTGGGCCAGC GTTACCAGTT CCGCTACGGC GCGTTCGACA ACCTGCTGGA GGCGACGGAC CCGCTGGGGG CGAGCGTCCG CTATCATTAC AATGCGGAGT CAGAATTCGC CGGGGTGACC AACAGTCAGG GGCAGACGTG GCAGTACCGG TTTGACACGG CGGGCCGGCT CAGCGAGGAG CGGCATTACG ACGGCCGGGT GTACCGGTAT GACTATGACG TGGCGGGGCA ACTGGCGAGC CGACAGGCCC CGGACGGCAG CCGACTGGCG TACGGCTATG ACGCGGGCGG TCGGCTGAGG ACGATTGAGG CGGTCAGTGC GGACGGGGCC GGCGAGGGGA CGACGACCTT TGCGTATGAC CTGTCGGGAC GGCTGCTGAA GGCGGCGAGC CCGGACGCGG TGGTAGAGTA TGCGTACAAC CGCGCCGGAC AGGTGGTGAG CGAGACGGTC AACGGCGAAG AGGTGCGCAC CGGCTACGAC GACGGCGGGC AGCGGTCAGT GGTGGAAGGG CTGCTGGCGT CGCTGAGTCT GGGGTGGCAG GGCGGCCGGC TGACGACGCT GGGCATCGGT TCGCACCTGC CGCTGACGTT CAGCCACACG GCGTCGGGGG AAGAGCAGCG GCGCAGCAAC GGGTCGGGCT TCGCGCTGCG GCACGAGTGG AGTGCTGCGG GGCTGTTGTC GCGTCAGGCG CTGGAAGGCG TGAGCGGGGT GCTGGAGCGG CGTTACCGGT ACGACGTACT GGACCGGCTG ACGGGCCTCA GCGACAGTCA CTGGGGCGAG CAGGCGCTGC GGCTGAACGG GACGGGCCAG GTGGTGGCGG AGCGTCGCGA GCAGGGTCGC CGGCAGCAGG CGCGGCTGTT TGGCTACGAC AGCGAGCAGA ACCTGTGCGA GGTGTCGGCA ATCGAGCCGG ACGGGGCGGG CCGGCTGTCG GCGAGCAATG CGGTGGTGCA GGCGTCATCG GGTTATGATA CGGCGGGCCG GGTGGTGATG CGTGGCGACA GCCGGTATCA GTACGACGCC TGCGGCCGGC TGGTGAGCAA ACGGGAAAGC CGCGCCGGTT TTCGGCCGCG GGACACGCAG TTCGGGTGGG ACGCGCAGGA CCGGCTGGTG CGGGTGAGTC TGCCGGACGG GTCGCGGTGG CGGTATGGTT ACGATGCGTT CGGCCGCCGG GTGAGCAAGG TGCGCGAGGG CCAGGGGCCG TCGGCGCAGG CGGTAGCGCG GGTGGCGTAC CGGTGGGACG GCGACCAACT GTCGGGCCAG ACGCAGTACC GTGCGGACGG CAGCGTGGCG CGGGCGGTGC AGTGGGTGTA CGAGCCGGGG AGTTTCCGGC CGCTGGCGCA GGTGGAAGAG AAGGGCGGGC GCACGCAACT GCACTACATC GTGACGGACC TGACGGGAAC GGCGCGGGAG CTGTGCAGCG AGACGGGGGA GGTACACTGG CGTGGCGAGC AGGCGTTGTG GGGCGCGCAC CGTGAAGAGA AAATCCCCAT TCCGCTGCGG CGCTGGCTGG GTGATGCAGC GAACGAGGAG GTGTATTGCG AGCTGCGTTA TCAGGGCCAG GTATACGATA GCGAGACGGG GCTGTATTAT AACCGACACC GGTATTACGA CCCTGAGACA GCGCAGTACC TGTCGGGAGA CCCGCTGGGG ATCGCAGGGG GGCTGAGGCC GCAGGGGTAT GTGCATAACC CGATGGAGTG GGTGGACCCG TTTGGGTTGG TTGGGTGTCC AGTTAAGAAA TATGAGGTCA GTACTTATAA TGATCTGAAA AATCGTTCGG TGAGTGGTGA TGAATTGGAT ATACACCACG CTATGCAGAA ACACCCTGCT GGACAAGTTG TTCCTGGCTA CGATCCTAAA ACTGCTCCAT CTATTGCTAT TCCTAAGGTA GAGCACCAAG AGATTCCAAC GATGAAAGGT CCATATACTG GATCAGCCAG AGATCTTTTA GCAAAAGATG TTAAGGATCT TAGAGAATAT ACAAATGCTC CTGCTTCTTC TATAAAAGAA CTGATCAAAC TTAATAAAGA AATGTTCCCT GACGCTTTTA AAAAGCTTCC TAGAAAATGA
|
Protein sequence | MSENKKATLI SSEDAANQTF STDNKISGGC AQCGCEVLIY YHYDSGKPVP NAPFVLTDSN KTEIHGKTDA NGLCQIYDMG CGTFELMLEE GSDDFTPRET VENNPVLQSN PAYATLAGEY FTLFLLLRKQ GLVNYDADDS SDRHVDVDGA GLFTSIPQEY RKSYDRFWEL DKRVNRGGRE LKRAVNKIHH SLAAEVADKG GESNAALMLF CEIALGFIPV VGQAMDVYAI GEWSWRSYQE PARLEDPLHI AEGALCAIGV IPGLGDALKV SGRAIIRALK EATPKELQFA IKTIRSLSDG NLVKGLTQLQ AELRHYGAQA KDLLLKIHAA LKQVLAESAL KNNWIVSMMK DSFSAMITAL EKLIAKYDGA LADIESQFKV FIDKVVTRVS GSARKKGSIA HDAAASKAPS PAESPSAKPA AQSESPLAAG EKTAGMQAGG GNNGKATSAK TDEKKNTPPA AKPKNAVGKE KTRQSSEGTE DITTGSNKGE QPDNSHQQAA AGEKDKTCNA NSKHCQNEGE PVDMATGYVV DWRTDFTQSG LLPLAMKRYY RSGGERRPGL LGALWRSNWD MSLTLDNGVA TLTDGEFNQA VFVLPEEGAQ SRAPSNPSWR LCRQQGHLVL QHVDGLRYRF EHALGLHLCL TAIEDRAGHR LTFLWDRADL CWISLPDGRL VHVETQRRRI TTLTLCDEHR QPLKTLVRYQ YDAQGYLLNV RAGEGRNFDY QYAPQGWLLR WSDLAHTWVE HEYDEQGRSR RDRTADGFWP GEFRYDDDAF TSQYHSGFGG VTTYVRDARN NILLRREPDG GEYRFEWVDN QLAAESDPLG GRTEYQRNDW GQVTAVTLPD GATHRYEYDD DGQLLAYIDP LGSAWRYTRD AAGRVDTASD PEGRTWQHRY SPQGLLSGVT GPDGRVQRYH YNRRGLLERL EAEGTSPVTF FYDGHDRLTE RHIAHEQGVQ VRRWVYEGGR ETPEKVIYED GSETRFGYDG EGNLTSVTDA LGQRYQFRYG AFDNLLEATD PLGASVRYHY NAESEFAGVT NSQGQTWQYR FDTAGRLSEE RHYDGRVYRY DYDVAGQLAS RQAPDGSRLA YGYDAGGRLR TIEAVSADGA GEGTTTFAYD LSGRLLKAAS PDAVVEYAYN RAGQVVSETV NGEEVRTGYD DGGQRSVVEG LLASLSLGWQ GGRLTTLGIG SHLPLTFSHT ASGEEQRRSN GSGFALRHEW SAAGLLSRQA LEGVSGVLER RYRYDVLDRL TGLSDSHWGE QALRLNGTGQ VVAERREQGR RQQARLFGYD SEQNLCEVSA IEPDGAGRLS ASNAVVQASS GYDTAGRVVM RGDSRYQYDA CGRLVSKRES RAGFRPRDTQ FGWDAQDRLV RVSLPDGSRW RYGYDAFGRR VSKVREGQGP SAQAVARVAY RWDGDQLSGQ TQYRADGSVA RAVQWVYEPG SFRPLAQVEE KGGRTQLHYI VTDLTGTARE LCSETGEVHW RGEQALWGAH REEKIPIPLR RWLGDAANEE VYCELRYQGQ VYDSETGLYY NRHRYYDPET AQYLSGDPLG IAGGLRPQGY VHNPMEWVDP FGLVGCPVKK YEVSTYNDLK NRSVSGDELD IHHAMQKHPA GQVVPGYDPK TAPSIAIPKV EHQEIPTMKG PYTGSARDLL AKDVKDLREY TNAPASSIKE LIKLNKEMFP DAFKKLPRK
|
| |