| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dbac_3012 |
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| Symbol | |
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| ID | 8378707 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfomicrobium baculatum DSM 4028 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013173 |
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| Strand | + |
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| Start bp | 3404657 |
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| End bp | 3407158 |
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| Gene Length | 2502 bp |
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| Protein Length | 833 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 645002247 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_003159503 |
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| Protein GI | 256830775 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAAACC AGGATCGCCT TCCCTCTCGC AATCTCGCAA CCTCATTGCG CGCAAGCCTG
AAAGCGACCT TTTCGCCAGC TACGGCCCAG CTCCTCCAGG AGGCTGTCAA ATCCGAACCG
AACTTCGGAG TCATCGCCTC CATCCTGAAA CTCGATCCGG CCCTGGCCAC TGCCATCCTC
TCCCTGGTCA ACTCACCCTA CTACGGACAG ACCAGCAAAA TTTCCGACCT GCAACGAGCG
GCGATCATCC TCGGCGACAA TGAGATCCTG CGCATCGCCC TGTCATTGTC TTTGCAAAAA
AACCTGAACG CAATTCTGGA AAAAAACGGT TTCGACACCT TCGCCAACTG GCGCATCATC
ATCTGGGCGG CCCTGGGCGC GGAGCTCATC GCCAGGCGGC TGGCCCCGGA AGAAGCGGAA
ACCGCGTATA TTTGCGCCCT GGTCAAAGAC CTCTCTCTGC TCCTCTACGC CGCCAACTTT
CCCGAACACC TTCTGCCGCA TCTCAAGCAA CCGGACTTCG TCAACACCGG CCCGACATTC
ATGTCCTGGC AGGACCATCT TCCGGAGGAT CACTCCAGCC TGACCGCCGA TCTGCTCACG
CAGTGGAGTT TTCCCGAGCC CATGATCGCG GCCATCACCG CGCACCACGA TCTGGAACAT
GTCTTTGACT ATCCTCCCCT GACCCAGGCG GTCATCCTTG GAACCAGATG GGCCGAAGCG
GAGTTTCGCA CCGACCCGGC CCCGGACAGC CTGAACCAGC TCAGTTTTCT CCTGGCCAAG
GCCGGCGCTC TGCCCCCGGA AGGCATGGAC GGGCTGCGCG GGCAATGCGC GACGCTTTTT
GCGGAACTCT CCACGGCCAT GAACGTCAAG GACCTCGACC CCGAGGACAG ACTTTACGCC
CACTCTTTGC AATCCATCCA GGACTTTCAT CACCAGGCCA AGGAAGTCGA GGGGCTGACC
GGCGGCAACG CGGCCATCGC GGCCTGTATC GGCAGACACC TGCGCTGGAA CTGGGATTGC
CGCAAAGCCG AGATCATCCT GCATGCGCCT GCCAACAGAC TCTGGGAAAG ATTCGTTCTG
AATGATGCCG GGGTGCACGG GCCCGACATT GCCCCGACCC TCGAAAAACT CAGGGCGTTT
TCGGACTCCG CATTCCCTCT GGAATCCGAG GGACACGTGG TCGGGGAACT GCGCCTGAAC
GACGGCAGCG ATTCCTGCCA AACCAAAGCC GAGGCCACGC TCTACACGCG CCTCCTGGCC
CGCAGCATCC GGCACCAGGC CAGCACCGTC GGACAACTTG AGATCAAGGC CGAACTGCTT
GATATTCTTC CCACCGGAGT GGCGCTGCTC GACGCGCAGG GACGCATTTT ACGGGCCAAC
CCCACCTTCA CCGATTTTCT TGGCGGGGCA GCTCAACTTG AAGACCGACT GGCCCAGGAC
AAGGACCCGG AGCAGGCGCG GCAGACAGTA CAGGGCTGGC GAGATTTCCT GCGCGATCCA
TCCCAGGGTG GCCATTGCGC CATCCATTGC CCGCTGGGCC CCGGCAACGC GCCCGCAGCA
TCGTCCTTTT CCCTGGCTGG TTACAAAATC AGCCACGGCT CGCAAACGAA CATTCTGGCC
ATGGTCCAGG ATCTGGCCGA AATCCGGGTG CTGGAATTCG AGGCCTTGCA CCAGCGGGAC
TTCCTGAACA CGCTGCTCGG CTCCATGCAG GACCTGGTCC TCACCACGGA CAAAAACGGG
ACCATCACCT TCGCCTCCGG CCGCCACAGC GCGTTCCTGA CCGGTCGCAA CCTCTTCCGT
CTGACCCGCC CCATGAACGA ACAGGAAGAT TCATGGGACA TGGAATTTCT GGAACAGAGC
CCCACGGCGG TGGAAGTGCA GATCGTCCTT GACGACGAAC ACCTGCAGCT CGAACTCGTC
TTTTCCCGCT TTTCGTTCGG CACCGACTAC GGACTTATTG TCGGCCGCAA TATTTCGACC
ATCCGCAGGC TGGAGCGCAA GATCCGGGAG CAGGCCCTTT TCGATTCCCT GACCCAGGTT
TTCAACCGGC ATCACCTCCA GCCGCTTCTC GACAGGGAGA TGTCCCGCGC CAAGCGCACC
GAGACCCCGC TCGGACTGAT CTTTTTCGAC ATCGACAAAT TCAAGCTCTT CAACGATACC
CACGGCCACC ATGGCGGCGA CAAGGCCTTG AAAGAACTGG GGCAGCTTCT GCGACGCATA
CTGCGCAAAG GGCTGGACTT TCCCTGCCGC TTCGGAGGTG ACGAATTCGT CGTCATCTCC
AGCAACTCCA CCGTCGACAA CCTGCTGACA ATTGCTGAAA GAATTCAGAA AGAATTCAGC
ATACTGCATC ATGGGCAGGT CACATTGAGC ATCGGCATGA GCATGCTTGA ACCCGGGGAC
TCCTCGCATT CCCTTCTTGA ACGCTGCGAC AAAGCCAATT ATCAAGCCAA GGCGCAAGGC
GGAAACGCCA TCGTGCGCCT GCAAACCGAC CAGAACCTCT GA
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| Protein sequence | MPNQDRLPSR NLATSLRASL KATFSPATAQ LLQEAVKSEP NFGVIASILK LDPALATAIL
SLVNSPYYGQ TSKISDLQRA AIILGDNEIL RIALSLSLQK NLNAILEKNG FDTFANWRII
IWAALGAELI ARRLAPEEAE TAYICALVKD LSLLLYAANF PEHLLPHLKQ PDFVNTGPTF
MSWQDHLPED HSSLTADLLT QWSFPEPMIA AITAHHDLEH VFDYPPLTQA VILGTRWAEA
EFRTDPAPDS LNQLSFLLAK AGALPPEGMD GLRGQCATLF AELSTAMNVK DLDPEDRLYA
HSLQSIQDFH HQAKEVEGLT GGNAAIAACI GRHLRWNWDC RKAEIILHAP ANRLWERFVL
NDAGVHGPDI APTLEKLRAF SDSAFPLESE GHVVGELRLN DGSDSCQTKA EATLYTRLLA
RSIRHQASTV GQLEIKAELL DILPTGVALL DAQGRILRAN PTFTDFLGGA AQLEDRLAQD
KDPEQARQTV QGWRDFLRDP SQGGHCAIHC PLGPGNAPAA SSFSLAGYKI SHGSQTNILA
MVQDLAEIRV LEFEALHQRD FLNTLLGSMQ DLVLTTDKNG TITFASGRHS AFLTGRNLFR
LTRPMNEQED SWDMEFLEQS PTAVEVQIVL DDEHLQLELV FSRFSFGTDY GLIVGRNIST
IRRLERKIRE QALFDSLTQV FNRHHLQPLL DREMSRAKRT ETPLGLIFFD IDKFKLFNDT
HGHHGGDKAL KELGQLLRRI LRKGLDFPCR FGGDEFVVIS SNSTVDNLLT IAERIQKEFS
ILHHGQVTLS IGMSMLEPGD SSHSLLERCD KANYQAKAQG GNAIVRLQTD QNL
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