| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daud_1684 |
|---|
| Symbol | |
|---|
| ID | 6026607 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Desulforudis audaxviator MP104C |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010424 |
|---|
| Strand | - |
|---|
| Start bp | 1776655 |
|---|
| End bp | 1778325 |
|---|
| Gene Length | 1671 bp |
|---|
| Protein Length | 556 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641594505 |
|---|
| Product | integral membrane protein MviN |
|---|
| Protein accession | YP_001717816 |
|---|
| Protein GI | 169831834 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0728] Uncharacterized membrane protein, putative virulence factor |
|---|
| TIGRFAM ID | [TIGR01695] integral membrane protein MviN |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.131932 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGGCA CCCGGAGGGG TACGGCGACT GACAGGAGGC TTATGTTGAA CGGCAGGCGG
ATTGCGGGGG CGGCGGCAGC GGTCGTCGTT ATTACCGTTA TCAGCAAGAT ACTGGGTTTC
GGAAGAGAGG CGGCGCTGGC CGCCGTTTTT GGCGCGAGCG GGGCCACCGA CGCCTACCTG
GTGGCCATGA TCATCCCTTC GCTGCTCTTC GGGGTGGTGG GGACAACGAT CACCACGGTG
GGCATCCCGC TCTTCGCGGA GTATATCCAC GACCCCGCCC GGCGGCGGGA ACTGGCGGGA
CTCTTGTGGA GCACCTTCCA CGGGATCGTC GTGTTCCTCG GCTTGGTAGT GCTCGTGGCC
TGGCTGCTGA CACCCTGGCT GGTACGGCTG ATGGCCCCGG GGTTTGAGGG GGAGCAGGCG
CAGCTGACGG TGCTCCTGGT ACGGGTGCTG CTGCCGGCGG CGGTCTTCAT GGGTCTGGCC
GGCTGGGCGC AGGGAGTGCT GAATGCCCAC CAGCGGTTTA CGGCCCCGGC GGCGATGGGG
ATACCGTACA ACGTTATCAT CATCGCGGCG ATCCTGCTCT CCGGGCGCTG GTGGGGCATC
GAGGGCGTGG CGGTAGCAAC GCTGCTGGGC ATCGCCGCTC AGTTTTTGAT CCAGCTGCCG
ACCTTCCGGC GGCTGGGGCT TTCCTACCGG CCGCTTTTCG ACCTTGGTCA TCCGGGGCTG
AGGCGGATGC TGCTGCTGGC CGGGCCGGTG ATTATCGGCG TGGGGGCCAA CCAGCTGAAC
GTGATCGTCG ACCGCATGCT GGCCTCGGGT CTGGCTGAGG GGAGCATCTC GGCGCTGAAC
TACGCCCAGA AGGCGCTGGG GCTGCCGGTA GGGCTGTTTG CCCTTCCGCT GGTCACGGTA
CTCTACTCTT CACTCAGCAG GCATAACGTG GTGGGGGACG CGGCGGCCTT CCGGGAGACG
TTGGCGCGGG GGCTGTCGGT GCTGGGCTTT TTGATGATCC CCATGACCGT CGGGCTGATC
GTCCTGCGGG CCGACTTCGT GCGCTTCCTG TTCCAGCGGG GGGCCTTCGA CGACGCCGAC
GCGGCCATGA CGGGTACGGC GGTCCTCTTC TACAGCCTGG GGATCCTGTT CATTGTCTGG
TGGGACTACC TGAACCGGAC GTTTTACGCG CTGCAGGACA CGGCCACGCC CATGTGGACG
GGCCTGGCGG CGGTGGCGGT GAACATCGGC CTGAACCTGG CCCTGGTACG GGTTATGGGC
CTCGGGGGGC TGGCGCTGGC CTCCTCAGCG GCGGCGCTGG TGGGCTTCGG GCTGATCCTA
TGGCGTTTGC GGCGGCGGCT GGGGCGCATC GGAGGACGGC GGCTGGCCAT AGAGACGGGG
AAGGTATGTC TGGCGGCGGG GCTGATGGGC CTGGCGGTCT GGCGGGCGAA CGAGGCGCTG
GCCGCCGGGG CCTGGGGGCT GTTGGCGGAG CAGCTGGTGC AGGCGCTCGG CGGCGGGGCG
CTGGGGGACT TTGCGGCGGC GGGCGTGAAG CTCATCGGGC TGATCGCCTT CGGCGGGCTG
GTATACACAG TACTGTGCCG GCTTTTGCGG GTGCGGGAGA TGGCCCTGGT GTGGGAGCTT
GGCCGCAGCG TACTGGGCAG GCTGGCAGGG GCCAACCGTC AGGCGGGGTG A
|
|---|
| Protein sequence | MRGTRRGTAT DRRLMLNGRR IAGAAAAVVV ITVISKILGF GREAALAAVF GASGATDAYL
VAMIIPSLLF GVVGTTITTV GIPLFAEYIH DPARRRELAG LLWSTFHGIV VFLGLVVLVA
WLLTPWLVRL MAPGFEGEQA QLTVLLVRVL LPAAVFMGLA GWAQGVLNAH QRFTAPAAMG
IPYNVIIIAA ILLSGRWWGI EGVAVATLLG IAAQFLIQLP TFRRLGLSYR PLFDLGHPGL
RRMLLLAGPV IIGVGANQLN VIVDRMLASG LAEGSISALN YAQKALGLPV GLFALPLVTV
LYSSLSRHNV VGDAAAFRET LARGLSVLGF LMIPMTVGLI VLRADFVRFL FQRGAFDDAD
AAMTGTAVLF YSLGILFIVW WDYLNRTFYA LQDTATPMWT GLAAVAVNIG LNLALVRVMG
LGGLALASSA AALVGFGLIL WRLRRRLGRI GGRRLAIETG KVCLAAGLMG LAVWRANEAL
AAGAWGLLAE QLVQALGGGA LGDFAAAGVK LIGLIAFGGL VYTVLCRLLR VREMALVWEL
GRSVLGRLAG ANRQAG
|
|---|
| |