| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daud_1356 |
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| Symbol | secD |
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| ID | 6026312 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Candidatus Desulforudis audaxviator MP104C |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010424 |
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| Strand | - |
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| Start bp | 1430626 |
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| End bp | 1431858 |
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| Gene Length | 1233 bp |
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| Protein Length | 410 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641594171 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_001717497 |
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| Protein GI | 169831515 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.066873 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAGGTTGG GTAATTTACT TAAGGTCGCC GTGATTCTTG TAGTTGCGGC CGCCGTTTCG
CTGGTCTCCT TTTACCCGGT GGCGGGCGTG CCGTGGCTGC CCCTGACCCA GGACATCAAC
CTGGGTCTGG ATTTGCGCGG CGGGGTGCAC GTGGTCCTCG AAGCGGTGGA CACCGAGGAC
GCAAAAGCAA CTCCGGACGC GGTACAGCGG TCGATCGGGA TGCTTGAGGA ACGAATCAAC
CAGTTCGGGG TGACCGAACC GGTGATCCAG CAGCAGGGTA CAAACCGGAT CATCGTGGAA
ATCGCCGGGG TCGACGATCC CGACGCCGTG GTCCGCGACC TGATCCGTCC GGCCTACCTG
GAGTTCCGGA CCGAGGACGG CACTACGGTC TTGACCGGGG CCGACCTGTC CGATGCCCGG
GAAGCGATTA ACCCGAACAC CAGGGAACCC GAAGTGAACC TGACCTGGAA CCCGGAAGGG
GCGAAAACCT TTGCGGAAGT GACGGCGGCC CACGTGGGCC GGCGCTTGGG CATTTACCTG
GACGGGCACA TGCTGCAAAA CCCGGAAATC AAGCAACCCA TCCCGGACGG CAAGGCCGTG
ATCACCGGAT ACGAGTCCCT GCAGGAGGCG AACCGGGTCG CCGTCCTGTT GCGTTCCGGC
GCCCTGCCGG TCAAGCTGGA CATCATGGAG AAGCGCACCG TTGGCCCGCA ATTGGGGGCG
GATTCCCTGG AGCGTTCGGT CACCGCCGGG GCGATCGGTT TCGGCGCCAT CCTGCTGTTC
ATGGTGCTGT ACTACCGCCT GCCCGGACTG GTGTCCGCCG TTTCCCTGGT GGTGTACGCC
ACCCTGGTCC TGCTGGTGCT GGCGGCGTTC AACGCCACGC TGACTTTGGC CGGGATTTTC
GGGTTCCTGC TCTCGCTGGG GATCGCCATC GACGCCAACA TCATCATCTT TGAACGTCTC
AAAGAGGAAT TACGCACCGG CCGCTCATTA CGCTCGGCGG TGGATGCCGG TTTCAAACGG
GCCTTCGTGG CCATTCTGGA CGCGAACGTC ACCACCCTGA TTGCGGCCGT GATTCTTTAC
GTGTTCGCAC CGGTAATGAT CAAAGGGTTC GCGCTGACCC TCGGCATCGG CATCCTGATC
AGCATGTTCA CCGGCCTGGT GCTCACCAAA TGGATGCTTC ATCTGCTCGC GGGTAGTGGG
ATGGTCAACA GTCCCCGTCT GTACCTGAAA TAG
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| Protein sequence | MRLGNLLKVA VILVVAAAVS LVSFYPVAGV PWLPLTQDIN LGLDLRGGVH VVLEAVDTED
AKATPDAVQR SIGMLEERIN QFGVTEPVIQ QQGTNRIIVE IAGVDDPDAV VRDLIRPAYL
EFRTEDGTTV LTGADLSDAR EAINPNTREP EVNLTWNPEG AKTFAEVTAA HVGRRLGIYL
DGHMLQNPEI KQPIPDGKAV ITGYESLQEA NRVAVLLRSG ALPVKLDIME KRTVGPQLGA
DSLERSVTAG AIGFGAILLF MVLYYRLPGL VSAVSLVVYA TLVLLVLAAF NATLTLAGIF
GFLLSLGIAI DANIIIFERL KEELRTGRSL RSAVDAGFKR AFVAILDANV TTLIAAVILY
VFAPVMIKGF ALTLGIGILI SMFTGLVLTK WMLHLLAGSG MVNSPRLYLK
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