| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daud_1290 |
|---|
| Symbol | |
|---|
| ID | 6026758 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Desulforudis audaxviator MP104C |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010424 |
|---|
| Strand | - |
|---|
| Start bp | 1362881 |
|---|
| End bp | 1365268 |
|---|
| Gene Length | 2388 bp |
|---|
| Protein Length | 795 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641594107 |
|---|
| Product | CRISPR-associated helicase Cas3 |
|---|
| Protein accession | YP_001717433 |
|---|
| Protein GI | 169831451 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1203] Predicted helicases |
|---|
| TIGRFAM ID | [TIGR01587] CRISPR-associated helicase Cas3
[TIGR01596] CRISPR-associated endonuclease Cas3-HD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATAG TGTTGCCAGA TTTTGATCAT ATTTGGGCCA AAAGCCGGGT TGGCAAGGCA
ACCAGTGGAG AGACGTTAGT CAGTCATACT CAACGGGTCC TTGCCAATGT TGTTGCTTTG
CATGCGCGTA TGCCGGAATT GGATCAGCTT TCTCAAATGC CGCGTTTCTG GTCGCGAATG
GCCCTGGCAG CGGTTCTCCA CGATGTCGGG AAATGTGCCG GTGGATTCCA GAAAATGCTC
AGAGGCAATG GAGAGTTTCC ATTCCGGCAT GAAGTCCTTT CTGCCGCCTT TCTTCCTTGG
CTTCTAGACA ACGACCCGCA TCAGGATCTG CCGTGGGTGG CTGCCGGGAT TCTGTCTCAT
CACAAGGATT TTTCGATTCT TGAGCGGGAT TTTCCTCCGG GTTGCGACTG GGAGGAGCCT
CCACTGTCCG ATTCTTTGGA GCAAGTGGCC CTGGATCTGG ACGAAGAGTT TTTCCATCTT
GCCCCGAAAA TGGTCTTGTA TGGCTTGTTG CCGTTACTAA AAGGGTGTTT GTTGTTGGCG
TCGAATGAAC GGTTCATCCT TCCGGCTTCA GATGGAACCT TTGATCGGTC AACCTTCCCG
GGGTTTGCGC GGCGGGCATT GGACGCCTAC GCTCAACTGG TCGTCCGCCT TCGCAAAGAG
GATGCTCGTT CCTCAGCAGC CCTAGCCGGA CGATTTACAA GGGGCGTGTT GATCTTGGCG
GATCATGCGG GGTCAGCTTG GCAGGCATTT GCGAAGTTGG AGTCTCTTGC ATCTCCAGCC
ATCATGGCAA GGGTGCTGGA TTTGCCACCG CCTGCAAAGA CTGGAGATGA GGTCTATGCC
CATCAAACCC ACGCCAGCGA GACGCCGGGG TGCGCTGTTC TGGTAGCCCC GACGGGGAGC
GGCAAGACCG AGGCCGCTTT ACTATGGGCC GCCGCAAACG GGCGACAAAC CGTTGGAAAC
CCTCCGCTTT TCTATGTGCT TCCTTACCAG GCTAGCCTGA ATGCGATGCG TAGTCGCTTG
GGCGAGCGCT TCGGTGACGA CCGGGTGGTG TTGCAGCATT CCCGTGCCTT GCAGGCCCTT
TACCGGCAGT TATTGGACCG TGGTTACACT CCGGGAGAAG CAAAGAACCA GGCTGAGCGA
GAGATCAATC TCGGAAGGTT GCATGTTGCC CCGGTGCGTA TTCTTACCCC ATACCAGCTT
CTGCGTGGTG CATTCCAGCT TCGCGGCCAT GAGGCTATCT GGACTGATTG TGCAGGAGGT
CGCATAGTCT TTGATGAAAT CCACGCTTAC GATCCTAGCC GACTGGGAAT GATTTTGGCG
CTCCTAGAGC ATATGGTTCG AGATTTGACG GTAAACGTGC TGGTAATGTC CGCCACTTTG
CCTTCAATCC TTAAAGAGAT TCTAAATGAA AAACTCAACC GACCTACACC GATTATAGCC
ACGACGAAAG CATATGAGGC GTTTCGCCGC CACCGTTTAT GCTTGAAAGC GGCAGATTTG
CTGGATGAAG AGACAATACT GGAGATTCAT CAGAAGGCGA GAAGAGGTTT GGCTGTTATG
GTCGTAGCTA CTACTGTTCA GCGTGCACAG CAAATGTGGG AGACGTTGAA TGCTGTTTCG
AATGGTGAAA TCCCGGTGGA ACTGCTCCAC GGCAAGTTTT GTTCCCGGGA CCGCTTTAAG
AAAGAGCAGT GGTTGTTGCA GCAGGTCTCC ACGAGAAATG CCGGGAAACG GAAGAACCCA
TTAATTCTGG TGGCTACCCA GGTGGTGGAG GTTAGTCTAG ATGTGGATTT TGATGTCTTG
TTTACCGATC CAGCGCCCTT GGAGGCGTTG TTGCAGCGTT TCGGACGGGT CAATCGCGGT
CGCCGGTACC GGGAACGGGA CGTGATTGTT TTAACCGAGA TTCCGAAAGG CTGTCCGGTT
TATTCGAAAA CCCTCATTGA AAAGGCCTTG CAGCAATTGG TGCCGCTGGA TGGGCATATG
GTGGATGAAG CCAAAATCCA ACTTCTGTTG GATGCCGTAT ACAGCGGTTC GGTCTCCGAT
TGGTGGAGAG ATGAGGTACT GAAGGCCGCA GAAGCATTTA AGTCCGAGGT CTTGTCCAAT
CTGTATGCTT TTGAGACTGA CGAACGGTTG GAAGAAAAAT TCTGTGAAAT GTTTGATGGA
CAAGAAGTTC TACCAATGGA TCTATGCGAT GAATACATCC GGCTCAATCA GGAGGAACCC
TTACATACGC AGTCGCTGTT AGTCTCCGTG AGTAATAGGC AGTTTTGGCG ATTGCGGAAG
GAACATCTGC TCGAAAAAGT GGACCAGCAT TTATGGGGGG TCCGTGTTCC CTATGATTCC
CGCTTTGGGC TTCAATTGCA GCGGGAGTTG CTGCGTGAGA CTGGATAA
|
|---|
| Protein sequence | MKIVLPDFDH IWAKSRVGKA TSGETLVSHT QRVLANVVAL HARMPELDQL SQMPRFWSRM
ALAAVLHDVG KCAGGFQKML RGNGEFPFRH EVLSAAFLPW LLDNDPHQDL PWVAAGILSH
HKDFSILERD FPPGCDWEEP PLSDSLEQVA LDLDEEFFHL APKMVLYGLL PLLKGCLLLA
SNERFILPAS DGTFDRSTFP GFARRALDAY AQLVVRLRKE DARSSAALAG RFTRGVLILA
DHAGSAWQAF AKLESLASPA IMARVLDLPP PAKTGDEVYA HQTHASETPG CAVLVAPTGS
GKTEAALLWA AANGRQTVGN PPLFYVLPYQ ASLNAMRSRL GERFGDDRVV LQHSRALQAL
YRQLLDRGYT PGEAKNQAER EINLGRLHVA PVRILTPYQL LRGAFQLRGH EAIWTDCAGG
RIVFDEIHAY DPSRLGMILA LLEHMVRDLT VNVLVMSATL PSILKEILNE KLNRPTPIIA
TTKAYEAFRR HRLCLKAADL LDEETILEIH QKARRGLAVM VVATTVQRAQ QMWETLNAVS
NGEIPVELLH GKFCSRDRFK KEQWLLQQVS TRNAGKRKNP LILVATQVVE VSLDVDFDVL
FTDPAPLEAL LQRFGRVNRG RRYRERDVIV LTEIPKGCPV YSKTLIEKAL QQLVPLDGHM
VDEAKIQLLL DAVYSGSVSD WWRDEVLKAA EAFKSEVLSN LYAFETDERL EEKFCEMFDG
QEVLPMDLCD EYIRLNQEEP LHTQSLLVSV SNRQFWRLRK EHLLEKVDQH LWGVRVPYDS
RFGLQLQREL LRETG
|
|---|
| |