Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daud_1027 |
Symbol | |
ID | 6025974 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Candidatus Desulforudis audaxviator MP104C |
Kingdom | Bacteria |
Replicon accession | NC_010424 |
Strand | + |
Start bp | 1075953 |
End bp | 1077857 |
Gene Length | 1905 bp |
Protein Length | 634 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641593839 |
Product | deoxyxylulose-5-phosphate synthase |
Protein accession | YP_001717171 |
Protein GI | 169831189 |
COG category | [H] Coenzyme transport and metabolism [I] Lipid transport and metabolism |
COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGGGATTGC TGGACGGAAT AAGCCACTTG ACCGATCTCC GGGCGCTGAC CCCGGATCAG CTTGACGAAC TCGCCGCCGA GCTCCGCGAT CTGATTGTGT CCACCGTCTC CCGCACCGGC GGGCATCTGG CCCCCAACCT GGGAGTCGTC GAACTGACGC TGGCCCTGCA CTACGTATTC CGGGCTCCCG ACGACCGGAT CGTCTGGGAC GTAGGCCACC AGTGCTATGT GCACAAAATT CTCACCGGCC GCAAGTCGCA GTTTCACACC CTGCGCCAGT TCGAAGGCTT GAGCGGGTTT CCGAACCGGA ACGAAAGCGA GTACGACTGC TTCGGCACCG GGCACAGCAG CACCTCGATT TCCGCCGCGC TGGGCATGGC TCTTGCCCGG GATTTAAGCG GGGAGGACCG AAACGTGGTG GCAGTGATCG GGGACGGTGC ACTTTCGGGC GGGATGGCCT TCGAAGCGCT GAACCAGGCC GGTCACCTGG GATGCCGGCT CATTGTCGTT TTAAACGACA ACGAAATGTC CATTGCCAGA AACGTGGGCG CCATGGCCCG TTACCTCTCC CGGCTGCGCA CCGACCCAAT GTACTCTCGG AGCAAGGACG AAGTGGAGTC GCTCTTGCGG CGGATCCCCG CCATCGGTCC ACGGGTGCTC GGCTGGATTG AACGTATCAA GGACAGTCTG AAATACCTGG TGGTCGCCGG GATGCTGTTT GAGGAGTTGG GTTTCACTTA CCTGGGCCCG ATCGACGGAC ACAATATCCC CGCGATGCTG AACGTGTTCC GGCAGGCCCA GGCGGTTGAA GGTCCGGTGC TGGTGCACGT CCTGACCAAA AAGGGCAAAG GATATGCCCC GGCCGAGAAA AACCCGGATA AGTTTCACGG GGTCGGCCCG TTCGACCCGG CAACGGGGAA TACGCCTACC GACGCCAGGG TTTCGTTCAC CGAAGTATTC GGCCGGACAC TGGTTCAACT GGCCGAAGCG GACAGCCGCA TCCTGGCGAT CACCGCTGCA ATGACGTCGG GTACCGGCCT GGGGCCGTTT TCACGCCGGT TCCCGCAGCG TTTCTTTGAC GTGGGGATCG CGGAGCAGCA CGCGGTCACT CTGGCCGCCG GGCTGGCGGT TGAAGGCTAC CGTCCGGTGG TGGCCATATA TTCCACCTTC TTGCAGCGGG CCTACGATCA GGTGCTGCAC GACGTGTGTC TCCAGAAGCT TCCCGTGGTG TTCGCCCTGG ACCGGGGTGG GATCGTCGGC GAAGACGGTG TCACCCACCA GGGAGTGTTC GATTTCTCCT TCCTGCGCCC GGTTCCCAAC CTGGTGATGA TGGCCCCGAA AGACGAAAAC GAATTCCAGC ACATGCTGAA AACGGCCGTG GAACACGAGG GTCCGATCGC CGTGCGCTAC CCGCGGGGCA CGGGAACGGG CTGCGCGCTG GACCAGGATC TCGTGGCGTT GCCCATCGGA CGGGCGGAAG TGCTCCGCGA AGGGGACGAT ATTACGTTGA TCGCTATCGG AAACATGGTG CCGACGGCGG TCAAAGCCGC CGAAATTCTG GCTGAACGGG GAATAGAAGC GTCCGTGGTC AACGCCCGGT TCGTGAAGCC GCTGGACGAG AAGTGCATCT GCCATTACGC CCGCCGCACC GGGCGCCTGA TCACATTGGA GGAAAACGTG ATCGCCGGCG GATTCGGCAG TGCCGTTCAG GAACTCCTTG TCGCTAAGGG CCTTACCGAC GTCCGGGTAC AGTTGATCGG CCTTCCCGAT GTGTTTATCG AGCACGGTGC CCCGCACCTG CTGCGGGCCA AGTACGGGTT GACCGTGGAC CGCGTGGTCC GCACGGCGGA AAGTGAGAAA AGAAAGCGGG CCAGGCTGAA GCTGGCGCCG AGGTTGCTGA GGTAA
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Protein sequence | MGLLDGISHL TDLRALTPDQ LDELAAELRD LIVSTVSRTG GHLAPNLGVV ELTLALHYVF RAPDDRIVWD VGHQCYVHKI LTGRKSQFHT LRQFEGLSGF PNRNESEYDC FGTGHSSTSI SAALGMALAR DLSGEDRNVV AVIGDGALSG GMAFEALNQA GHLGCRLIVV LNDNEMSIAR NVGAMARYLS RLRTDPMYSR SKDEVESLLR RIPAIGPRVL GWIERIKDSL KYLVVAGMLF EELGFTYLGP IDGHNIPAML NVFRQAQAVE GPVLVHVLTK KGKGYAPAEK NPDKFHGVGP FDPATGNTPT DARVSFTEVF GRTLVQLAEA DSRILAITAA MTSGTGLGPF SRRFPQRFFD VGIAEQHAVT LAAGLAVEGY RPVVAIYSTF LQRAYDQVLH DVCLQKLPVV FALDRGGIVG EDGVTHQGVF DFSFLRPVPN LVMMAPKDEN EFQHMLKTAV EHEGPIAVRY PRGTGTGCAL DQDLVALPIG RAEVLREGDD ITLIAIGNMV PTAVKAAEIL AERGIEASVV NARFVKPLDE KCICHYARRT GRLITLEENV IAGGFGSAVQ ELLVAKGLTD VRVQLIGLPD VFIEHGAPHL LRAKYGLTVD RVVRTAESEK RKRARLKLAP RLLR
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