| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daud_0127 |
|---|
| Symbol | |
|---|
| ID | 6025560 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Desulforudis audaxviator MP104C |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010424 |
|---|
| Strand | + |
|---|
| Start bp | 137088 |
|---|
| End bp | 138092 |
|---|
| Gene Length | 1005 bp |
|---|
| Protein Length | 334 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641592980 |
|---|
| Product | nifR3 family TIM-barrel protein |
|---|
| Protein accession | YP_001716327 |
|---|
| Protein GI | 169830345 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0042] tRNA-dihydrouridine synthase |
|---|
| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family
[TIGR00742] tRNA dihydrouridine synthase A |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000167707 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTCTTTTG TTATCGGCAA GATTACCATC CCCAACCGGG TCGTCGCAGC GCCCATGGCC
GGGATCACCG ACCGTGCCTT CCGGGACCTG GCCCGGGAGA TGGGCTGCGG TTTGACCTGG
ACCGAGATGA TTTCGGCTCA AGCCCTGATC CAAGGGAACC GCCGGACCGC CGAACTCCTG
GAGGTGTCCG GGGAGCACCC GATCGCCGTT CAGGTTTTCG GGTCCGACCC GAACACCATG
GTCCGTGCCG CCCGGCTGGC GGCTGAAGCC GGGGCCGATA TCGTGGACCT TAACATGGGC
TGCCCCACGC CCAAGATAGT CAAGAGCTGT GAAGGCGCCG CGCTGATGCG TGACCCGGAA
AGGGCCGGGG AAATCGTGGC GGCGGTGGCG GCTGCTGTAC CAGTGCCGGT GACCGTAAAA
ATGCGCAAGG GCTGGGACGA GGGTTACCCC AGTGCCGTGG AATTGGCGCG GGCGGTGGCG
CAGGCCGGTG CGGCCGCGGT CACGGTGCAC GGGCGCCTGC GTTCCGAGTT TTTTGGCGGC
AGGGCGGACT GGAGCGTAAT CGGGGCGGTG AAGCAGGCGG TGTCTATACC GGTTATTGGT
AACGGGGACG TGAGAATCGG ACCGGACGCG GCCCGGATGC TGGCCGAGAC CAGGTGCGAC
GCCGTAATGA TCGGCCGGGC GGCGCTGGGC AACCCTTGGG TTTTCAGGCA GGTACGTGAC
TGCCTGGAGA CCGGTCAAGA ACCCCCGCCG CCGACTATGG ATGAGCGGGT GGCCATGGCC
CTGCGCCACT TTGATTTGTT GATCCGGTAC AAAGGCGAGG CTAGGGCCGT CCAGGAGATG
CGTAAGCACG CCGCCTGGTA CACCCGGGGT TTGCGCGGTT CGGCCCGGCT GCGGGAACGG
CTTCACGCCG CGGACACGGC CGCATCCCTA CGCAGTCTTA TCACGGGTGT CCCCGATTTG
GACAGGCGGG TGCCGTCATC CGAACGAAGG AGGAGATATC ACTAG
|
|---|
| Protein sequence | MSFVIGKITI PNRVVAAPMA GITDRAFRDL AREMGCGLTW TEMISAQALI QGNRRTAELL
EVSGEHPIAV QVFGSDPNTM VRAARLAAEA GADIVDLNMG CPTPKIVKSC EGAALMRDPE
RAGEIVAAVA AAVPVPVTVK MRKGWDEGYP SAVELARAVA QAGAAAVTVH GRLRSEFFGG
RADWSVIGAV KQAVSIPVIG NGDVRIGPDA ARMLAETRCD AVMIGRAALG NPWVFRQVRD
CLETGQEPPP PTMDERVAMA LRHFDLLIRY KGEARAVQEM RKHAAWYTRG LRGSARLRER
LHAADTAASL RSLITGVPDL DRRVPSSERR RRYH
|
|---|
| |