| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_3842 |
|---|
| Symbol | |
|---|
| ID | 3568013 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | - |
|---|
| Start bp | 4133447 |
|---|
| End bp | 4134703 |
|---|
| Gene Length | 1257 bp |
|---|
| Protein Length | 418 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637682316 |
|---|
| Product | D-amino acid dehydrogenase small subunit |
|---|
| Protein accession | YP_287040 |
|---|
| Protein GI | 71909453 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 63 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGAGTGC TCGTGCTGGG TGCCGGCGTT GTCGGCACAA CGAGCGCGTG GTATCTCGCT
CGGGCCGGGC ATCAGGTCAC GGTCGTCGAC CGCCAGCCGG TGGCCGGCAA TGAAACCAGC
TTCGCCAACG GCGGCCAGAT TTCGGTGTCG CATGCCGAGC CGTGGGCCAA TCCACATGTC
CTGCCGCGTG TGCTGAAGTG GCTCGGTCGC GAAGATGCGC CGCTGTTGTG GCGCTGGCGG
GCCGATCCGG CCCAACTGGC CTGGGGGTTG CGGTTTCTCG GTGAGTGCTT CCCCGGCCGG
GTCCGGCGCA ATATCGCCGC CATCGTGTCC ATGGCACTTT ACAGCCGTGG CCGATTGCAG
GCTCTGCGCG AAGAGTTGGG GCTGCAATAC GATCATCTCG AACGCGGCAT CCTGCACATC
TACACCGACC GTGACGAATT TTCGGCAGCG CTTGATGCAG CACGCGTCAT GCGCCAGTTC
GGTCTGGATC GCGACACGGT CGATGTCGAC AAGTGCCTGG AAATCGAACC GGCCTTGTCT
GGTGCGCGCC ATCTGCTGGT CGGTGGCGAC TACACGCGCT CGGATGAATC CGGTGATGCC
AACAAATTTA CCTGTGCCCT GGCCGAACAC GCCAAAGCAG CCGGCGTCGA TTTTCGTTAT
GGTCTGACTG TCGAGCGAAT CGCGACCAGC GGCAGCGAGA TTGTCGGCGT GCTGGTGCAG
CACAGCGAAG GTGGCCCGGA ACGGCTGACG GCCGATGCTT ATGTGGTCGC CCTCGGTAGC
TATTCGCCCT TGTTGCTCAG GCCGATCGGT GTCGGCCTGC CGGTCTATCC GGCCAAGGGC
TATTCGGCGA CGCTGACGCT GGCCGAAGCC AGCCTGGCGC CGACGGTCAG CCTGACCGAC
GACGAGCGCA AGCTGGTCTT TTCCCGGCTC GGCAATCGAC TGCGCATTGC CGGCACCGCC
GAATTCAATG GCTACAACCT CGAACTCAAT CCGGTGCGCT GTCAGGCGCT GATCGACCGC
ACGCGTCAGC TTTTTCCTCG CCTGGAAATC GTTGGCGAGC CGACCTTGTG GTGCGGCTTG
CGCCCGGCCA CCCCGTCGAA CGTGCCTTAT ATCGGCCAAA CCCGCTATCG CAACCTGTGG
TTGAATACCG GCCACGGCAC ATTGGGCTGG ACGATGGCCT GCGGCTCGGC CGCCTCGCTG
GCCGAAATGA TCAGCGGTCG CCGCCCCGAA CCGGAATTTC CCTTCCTGCG ATGCTGA
|
|---|
| Protein sequence | MRVLVLGAGV VGTTSAWYLA RAGHQVTVVD RQPVAGNETS FANGGQISVS HAEPWANPHV
LPRVLKWLGR EDAPLLWRWR ADPAQLAWGL RFLGECFPGR VRRNIAAIVS MALYSRGRLQ
ALREELGLQY DHLERGILHI YTDRDEFSAA LDAARVMRQF GLDRDTVDVD KCLEIEPALS
GARHLLVGGD YTRSDESGDA NKFTCALAEH AKAAGVDFRY GLTVERIATS GSEIVGVLVQ
HSEGGPERLT ADAYVVALGS YSPLLLRPIG VGLPVYPAKG YSATLTLAEA SLAPTVSLTD
DERKLVFSRL GNRLRIAGTA EFNGYNLELN PVRCQALIDR TRQLFPRLEI VGEPTLWCGL
RPATPSNVPY IGQTRYRNLW LNTGHGTLGW TMACGSAASL AEMISGRRPE PEFPFLRC
|
|---|
| |