| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_3216 |
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| Symbol | |
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| ID | 3566601 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | + |
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| Start bp | 3468531 |
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| End bp | 3470534 |
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| Gene Length | 2004 bp |
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| Protein Length | 667 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637681687 |
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| Product | type II and III secretion system secretin |
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| Protein accession | YP_286416 |
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| Protein GI | 71908829 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 53 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.141334 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTCGAC AAATAGGCAA ACCCCTTTCC ATCTTGATGA TGGCCGCGGC AATCGGCGGC
TGCAGCAGCA AATCCTTCCG CGATGGCATG GCCGCGATCG CTGACGGACG TCGGGATGAA
GGGGTCGCCT CGCTGGAAAA GGCCGCCCAG GAAAAACCGC GCGATACGGA GATCAAGGCT
GCCCTGATCC GCAACAAGGG GGAAGCCCTC GACGGCCATC TGCGCGAAGC CGACCGGCAG
CGGACAGCCG GCCAGTGGGA TGCCGCCGAG CTGGCCTACC GCCGGGCGCT GGCGCTGGAC
AACCGGAACA CGCGCGCCAT GCAGGGCCTG GAACAGATCG GCCAGGATCG CCGGAATGCT
TCGCTGCTGG CGCAGGCCGG CCAGATGCTG GGCAAGAACG ATCCGCTGGG GGCCGAGCGC
CTGGTGCGGA CCGTTCGGGG GCATGACCCA CTCAATGCCG AGGCCCGTCG CCTGCAGACC
GAGATCGACC GCCAGCGCGA CAGCGAAAAC AATGGCCGAT CGACGCCCGA GAGCCGGGCA
GCGCTGGCCA AACCGGTGAC ACTGGAGTTC CGCGACGCCA GCCTGAAATC GGTATTTGAA
GTCCTGTCGC GCGCCTCTGG TCTCAATTTC GTATTCGACA AGGACATCAA AGGCGACATC
AAGGTCACGC TATTTGTCCG CAACAGCCCG CTCGAAGACA TCCTGCGCCT GATCCTGACG
ACCAACCAGC TGGATAAGCG CCAGCTCAAC GACAACAGTT TCCTGATTTA TCCAAACACA
CCGGCCAAGT CCAAGGAGTA TCAGGAACTG GTGGTCCGCA ATTTCTACCT GGCCAATACC
GACGTCAAGC AGGCCCAGAA TCTGGTCAAG ACGGTGGCCA AGAGCAAGGA TGTCTTTGCC
GACGAAAAGC TCAACCTGCT GATCGTCAAG GACACGCCGG ACGCCATGCG CCTGGTTGAA
CGCCTGATCG ACTCGCTTGA CCTGGCCGAA CCCGAGGTGA TGCTGGAAGT CGAGGTGCTG
GAAGTGACGC GCAGCCGGCT CAACCAGTTT GGCGTCGATT GGCCGGATTC GGTCGGCTAT
GGCCTGTTGC AGGACACTTT GAGCACGACG ACGGCGACGG CGGCCGGCTA CACCACGACG
GTCACGCCCG GTGGCACGCT GGCCAACGGC TACATCAACC TGCGCAACCG GGGCGGGCTG
ACCAGCTTTG TCGCCAACCC GGGCCTGACC CTGAACCTCA AGGGGCAGAA CGCCGACACC
AACGTGCTGG CCAACCCGCG CATCCGGGTC AAGAACCGGG AAAAGGCCAA GGTGCATATC
GGCGACAAGC TGCCGGTGTT CACCACCACC GCCACGGCCA ATGTCGGCGT TTCGGCCTCG
GTCAATTATC TTGATGTCGG TCTCAAGCTC GACGTCGAAC CCAATGTCAC GCTCGATGAC
GAGGTATCGA TCAAGGTCGG ACTGGAAGTG AGCAGCATCG TCAAGGAAAT CACCGGCCCC
TCCAATTCCC TCGCCTACCA GATCGGCACC CGCAGTGCCA GCACCACGCT GCGCCTGAAG
GATGGCGAAA CACAGGTGCT CGCCGGCCTG ATCAGCGACG AGGAACGCAA GACGACCAGC
CACATCCCCG GACTGGGCGA AATACCCGTT GTCGGCCGCG CTTTTGGCAG CCACAAGGAC
ACCTCGACCA AGACCGAGAT CATCCTGCTG ATCACACCGC GTATCGTGCG CAACATCCAC
CGCCCGGAAT ACGTCCAGCC GGTGATTTCC TCCGGCACGG AAAACGCTGT CGGCGCAGCA
CCGATGGGCG TCCGGACGCA GGGCGGCCGC GCGCTATCGA TGAGTTCGCG CAGCAATGGT
GGCGGCATGC CGATGGCGAC CACCCGGGAC AATGCAGCCC GAGACAACGC CACCTCCGAA
GACGATGCCC CGCCCGAGGC CGATGACCCG CCGGTCGGAC AGGCCAAGCC GGCGACAACC
GAAGCACCGA AGCCGGAACG ATGA
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| Protein sequence | MIRQIGKPLS ILMMAAAIGG CSSKSFRDGM AAIADGRRDE GVASLEKAAQ EKPRDTEIKA
ALIRNKGEAL DGHLREADRQ RTAGQWDAAE LAYRRALALD NRNTRAMQGL EQIGQDRRNA
SLLAQAGQML GKNDPLGAER LVRTVRGHDP LNAEARRLQT EIDRQRDSEN NGRSTPESRA
ALAKPVTLEF RDASLKSVFE VLSRASGLNF VFDKDIKGDI KVTLFVRNSP LEDILRLILT
TNQLDKRQLN DNSFLIYPNT PAKSKEYQEL VVRNFYLANT DVKQAQNLVK TVAKSKDVFA
DEKLNLLIVK DTPDAMRLVE RLIDSLDLAE PEVMLEVEVL EVTRSRLNQF GVDWPDSVGY
GLLQDTLSTT TATAAGYTTT VTPGGTLANG YINLRNRGGL TSFVANPGLT LNLKGQNADT
NVLANPRIRV KNREKAKVHI GDKLPVFTTT ATANVGVSAS VNYLDVGLKL DVEPNVTLDD
EVSIKVGLEV SSIVKEITGP SNSLAYQIGT RSASTTLRLK DGETQVLAGL ISDEERKTTS
HIPGLGEIPV VGRAFGSHKD TSTKTEIILL ITPRIVRNIH RPEYVQPVIS SGTENAVGAA
PMGVRTQGGR ALSMSSRSNG GGMPMATTRD NAARDNATSE DDAPPEADDP PVGQAKPATT
EAPKPER
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