| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_0557 |
|---|
| Symbol | |
|---|
| ID | 3568882 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | - |
|---|
| Start bp | 617654 |
|---|
| End bp | 618781 |
|---|
| Gene Length | 1128 bp |
|---|
| Protein Length | 375 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637679000 |
|---|
| Product | BNR repeat-containing glycosyl hydrolase |
|---|
| Protein accession | YP_283784 |
|---|
| Protein GI | 71906197 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4692] Predicted neuraminidase (sialidase) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 63 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.560584 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCCCT TGTCGCCAGC AGTGATCCAC CATGGCAGCG CCGGGCTGTT TCTTGCTGCA
CTGGCAGCCG CCTTCCTGCG CCTGCCAGCC ACCGAAGCAC CGGCCTTTGT GCCGCCCCCC
GTCGTCGCCA GCCCGCTGCC GGCCGACATG ACACGAAGCA ACCTGCCTTC AGCCGGTGCC
ACGGCCGGAC CGGCAAGCCT GACCCTGCTG GCCGACGGCA AGGTAGCCGC GGCCTGGCTG
GCCGGACCGG GTAACGATAA CTCGGCGGCG ACGATCTGGT TGTCGATCCT CGGTCGCAGC
GGCTGGAGCC AACCCTTGCC AGCCGCCACC CGCGAAAGTA CGGCCGCCGG CACTTTTGCC
CACATGAGCA GCCTGGGACG CCCGCTTTTG CTGGCCGAAG GCAGCTGGCT ACACCTCTGG
TACGAAAGCC TGCCGCTCGG CAGCGGGGCA GGGGCGGCCA TTGTCCATAG CCTTTCCACG
GATGGCGGCA AGACGTGGAG CAAAGCGGAA CGACTGCAAA CCTCGCCGCT CGGCACACTG
GGCAACGGAC TGGGCGGACC GCCTCTGATG CTTGCTGACG GCGGCCTTGG CCTGCCGCTC
GACCAGCGAT TTCCGAAGCA AGGCAGCGAG TGGCTGCGCC TGTCGGCGAC CGGCCGGATA
GTGGACAAGA GACGGCTGGC CCACGCGGCA CCAACGCTGC AACCGGCGGT TGTCGCCCTC
GACGACCACA GGGGGCTGGC GGTGCTCCGC GACAACCGCG CCGGCACCAG CCGAGCCACG
CTCAGCACGA CCAACGGCGG CCAGACATGG GAAACGGCCA GCGAACTCGC CCTGCCCGCC
CCGGACGCAC CTGTTGCGCT GCTCCGCCTG GCCAGCGGCC GCCTGCTGCT GGCCGGCAAC
CCGCAACAGG GCAAGGAAGC GCTGCAGCTG TGGCTCTCGG CCGACGATGG GCAAACCTGG
GCGATGAAAC GCATCGTCGA AGCGGCCAGC GATGGCGGGG CCGAATTCGC TGATCCGGCC
TTGCTGCAGG GGCGCGATGG CCGCATTCAT CTGACCTACA CCTGGCGCCA GCAGCAGATC
AGGTATGTCG CATTTACCGA AGCATGGCTG GCGGGAGGCG CACCATGA
|
|---|
| Protein sequence | MQPLSPAVIH HGSAGLFLAA LAAAFLRLPA TEAPAFVPPP VVASPLPADM TRSNLPSAGA
TAGPASLTLL ADGKVAAAWL AGPGNDNSAA TIWLSILGRS GWSQPLPAAT RESTAAGTFA
HMSSLGRPLL LAEGSWLHLW YESLPLGSGA GAAIVHSLST DGGKTWSKAE RLQTSPLGTL
GNGLGGPPLM LADGGLGLPL DQRFPKQGSE WLRLSATGRI VDKRRLAHAA PTLQPAVVAL
DDHRGLAVLR DNRAGTSRAT LSTTNGGQTW ETASELALPA PDAPVALLRL ASGRLLLAGN
PQQGKEALQL WLSADDGQTW AMKRIVEAAS DGGAEFADPA LLQGRDGRIH LTYTWRQQQI
RYVAFTEAWL AGGAP
|
|---|
| |