| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5314 |
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| Symbol | |
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| ID | 5750926 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 5892448 |
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| End bp | 5893938 |
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| Gene Length | 1491 bp |
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| Protein Length | 496 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641300439 |
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| Product | rhomboid family protein |
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| Protein accession | YP_001566328 |
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| Protein GI | 160900746 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.63242 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCTACG CGATTCCGCT GGAGGACCGG CCCCGCTGGA GCAATCCGCC GTGGATGACG
CTGCTGATCA TCCTCGTGAA CGTGCTGGTG TTCTTCGGGC CCCAGCGCTC CGAAGAGCGC
GCCCAGCAGG CGGCGGCGCA GTTCTATGCC GCCAGCGCGC TGCCGGGCAT CGAGTTGCCG
CGCTTTGTGG ACTGGCTGCA GCGCACGGAT TCGCCCATTG CCAAGCAGGC GAAGGTGCTG
CAGAAAAAGG GCCTGGTCGA GCCGCTGCTG CAGCGCATGG AGCAGGAGCC CGCCTTCCTG
GCGCTGCTGC GCAGCGGGCA GATCGTGCCC GAAAGCGATC CCCTGCACGA GCGTTGGCAG
ACCGACCGCA GCCGCTACGA GGCGTTGCAG CCGGAACCTT TCACCACGCG CTGGGCCAAA
AACTATGCCC TGGACGCGCC GATGCGCCCG GTGACCTGGA TCACCGCAGC GTTCCTGCAT
GTCGACACCA GCCACCTGGT GGGCAATATG CTGTTTCTCT TCATGTTCGG CTTCTCGGTC
GAGTTGATGC TGGGGCGCGG CACCTATCTG TTGTTTTATC TGCTGGGCGC CGTGGGTGGC
TCGGTGCTTT CGGGTTGGGC CTATGCAGGC ACAGGCAGTT ACGGCTTGGG CGCCTCGGGC
GCCGTGGCCG CCCTGATGGG CATGTACGCC GTCATGTACC GGCTGCGGCG TGTCCGTTTC
TTCTATCAGC TGTTTTTTTA TTTCAACTAC GTCACTGCGC CCGCCTTGAT CCTGCTGCCA
GCCTGGATCG CCAATGAAGT GCTGCAGCAT TTTTTCAGTG GCCAGAGCGC TGGCTACATG
GCCCACCTGG GCGGCCTGCT CACGGGCGCG ACCCTGATGG CCCTGCATCT GCGCCGCAAG
CCACGGGCGG CGTTGGCGGG CTGCCATTCG GCGCCGGACG ATGGCTTCGA CGCACATGTC
GCCAACGCGC GACGCCTGGG CCAGGCGCTG GACATGGAGG GCGCCCTGCG CGCCTGGCGC
GCCGCAGCCC AGCTGCGGCC TGCCGACACC GAGGTGCTGC GCGCCTGGTT TGCCGCAGCC
CGCTATGCGC CTGCCAGCGA GGACTTCCAC CGTGCGGCCC GGCGCATCTT CAGGCTGCCG
GCCCGTGATG CCGCCACCCT GGCCTGGCAG CACGCCAGCT ACCGCATCTA CCTGGACCTG
GCCCGCCCAG GCGCCAGAAT CGCGCCCGAG GACATGGCCA GGCTGGTGCG CCGCTTCACG
CGTGCCCGTG CGTTCGACGA TGCCGAGAAG CTGTGCCGCG CGCTGCTGCA GGCAGCACCC
GGCCAGCCGG GCCTGGGCGA GACGCTGTGC CTGCTGGTCA ACGGCCTGCT GCAGCAGGGG
CTGGCACAGC GCGCCCGCGC CTGGCTGCCA CAACTGCAGC GCTGGGCGCC CGATGAGGCC
GTGACCCGGC TGTTGCTCGA CGGGCAGGCC CGGTCCCAGG CCACGGCGTG A
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| Protein sequence | MFYAIPLEDR PRWSNPPWMT LLIILVNVLV FFGPQRSEER AQQAAAQFYA ASALPGIELP
RFVDWLQRTD SPIAKQAKVL QKKGLVEPLL QRMEQEPAFL ALLRSGQIVP ESDPLHERWQ
TDRSRYEALQ PEPFTTRWAK NYALDAPMRP VTWITAAFLH VDTSHLVGNM LFLFMFGFSV
ELMLGRGTYL LFYLLGAVGG SVLSGWAYAG TGSYGLGASG AVAALMGMYA VMYRLRRVRF
FYQLFFYFNY VTAPALILLP AWIANEVLQH FFSGQSAGYM AHLGGLLTGA TLMALHLRRK
PRAALAGCHS APDDGFDAHV ANARRLGQAL DMEGALRAWR AAAQLRPADT EVLRAWFAAA
RYAPASEDFH RAARRIFRLP ARDAATLAWQ HASYRIYLDL ARPGARIAPE DMARLVRRFT
RARAFDDAEK LCRALLQAAP GQPGLGETLC LLVNGLLQQG LAQRARAWLP QLQRWAPDEA
VTRLLLDGQA RSQATA
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