| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5240 |
|---|
| Symbol | |
|---|
| ID | 5750852 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 5806480 |
|---|
| End bp | 5809374 |
|---|
| Gene Length | 2895 bp |
|---|
| Protein Length | 964 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641300365 |
|---|
| Product | putative transmembrane protein |
|---|
| Protein accession | YP_001566254 |
|---|
| Protein GI | 160900672 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3170] Tfp pilus assembly protein FimV |
|---|
| TIGRFAM ID | [TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.313298 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.899168 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATCGTT GGAAACTCTC TGTGCTGGCC ACTGCGGCCG TCGTCTCGGT CGCACTGCCC
GCCTCCGAGG CCTGGGCACT GGCTCTGGGC CGGGTGAACG TGCAATCGGC CCTGGGCGAG
CCCCTGCGTG CCGAAGTCGA AATCCCCCAG ATCACCGCCG CTGAAGCCGA AGGCCTGCGC
GTGGGCGTGG CCTCTCCCGG CGTCTTCCGC ACCCTGGGCA TGGAGTACAA CGCCACCGCC
AGCCAGGTGC GCGTCAGCGT GCAGCGCCGC CCGGATGGCT CGGCCGTGCT GCGCCTCACA
AGCACACAGC CCGTCAACGA ACCCTTTGTC GATCTGGTGA TCGACGCCAG TTGGGCCTCG
GGCAACCTGC AGCGCAACTA CACCCTGCTG CTGGATCCGC CCAACCTGCA AAAGCTCCCG
CCTGCCGTGA CGGCTGCAGC CCAGGCCTCG GCACCCGAGC CTGCCGCAGC GCCGCGCCGC
GCAGCCCCCG CCCCCTCGCA AGCCGCTGCA GGCAACACCG AGGAAAGCCG CCCCGCGCCA
GCAGCCGCGC GCCGTGCCGC CCCGGCAGCC CGCGAGCGCG CCGCAGCGGC TCCCGCGCCG
TCCGAGGCCT CCGAAGTCCG CATCAAGGCC GGGGACACGG CAGGCCGCAT CGCCGCCGCC
CACCTGCCAG CCGGCGTTTC GCTGGACCAG ATGCTGGTGG CCATGCTGCG CACCAATCCC
AAGGTCTTCA TCAACGGCAA TGTGAACCGC ATGCGCTCCG GTGCCGTGCT CACAGTGCCG
GACGAAGCCA CGGCCCAGGC CACCTCGCCG CGCGAAGCGC GCCAGATCGT TGCCGCCCAG
TCCCGCGATT TCAACCAGTT CCGCCGCCAG CTGGCCAGCG CCGCGCCGGC CGCGCCCGTG
GCCTCCGCCA ACCGCGAAGC ATCGGGCAGC GTCCAGGCCC AGGTCGAAGA CCGCAAGCCG
TCCACCGCAG CACCCGACAA GCTCACGCTG TCCAAGGGCG CCGTCAAGGG CGTGGAAGCC
GATGAGCGCC TGGCCAAGCA AAAGCAGTCG GACGACCAGG CATCGCGCAC GGCCGAGTTG
CAGCGCAACA TGTCCGAGCT GAGCCAGATC GCCGCCGCCA CCAAGCCCGC CGAAGGTGCT
GCTGCAGCAC CTGCCTCGGC AGCCAGCGGC ACGGCAAACG GCGTCGCTGT GCCGGGCGCG
CCGACCGTGC CTGCAGCGCC TGAAGCTGCA GCACCCCAGA CAACTCCCGC GGCCCCGGCA
GCGCCTGTCG ATGCAACTGC TGCGGCCGCT GCGCCCACCG CTGCTCCAGA CGCCGCAGCC
AATGCAGCCG GCTCCGCAGC GCCCGCAGCA GAAGCCGCGC CCGCCACGCC CGCTCCGGCC
GAGCCGCCGA AGCCCAAGCC GGCACCCGCT CCCGCAGCAT CGATCGCCGA GCCCAGCTTC
ATCGATACGC TGCTGGAAGA CCCCACCATC CCGCTGGCCG GTGCTGCCCT GCTGGCCCTG
CTGCTGGGCT ATGGCGGCTA CCGCGTCATG CAGCGCCGCC GCGCCGCTGC CGCCTCCAGC
GAAAGCGCCT TTGGCGACAG CCAGCTGGCA GCCGACTCCT TCTTTGGCGC CAGCGGCGGC
CAACGCGTGG ACACCGGCAC ATCGAGCCAG CTGTCCGGCA CCTCCATGCA TTACTCGCCC
AGCCAGCTTG ATGCGGGCGA TGTGGACCCC GTGGCCGAGG CCGACGTCTA CCTGGCCTAT
GGCCGCGACC TGCAGGCAGA GGAAATCCTC AAGGAAGCGC TGCGCACCGA CCCCAACCGC
ACCGCTCTGC ACCAGAAGCT GGCCGACATC TACGCCAAGC GCCATGACCG CAAGGCCTTC
GAGGCCGTCG CGCAGACCCT GCATGGCCTG ACCCAGGGCA AGGGCGTGGA CTGGCAGCGC
CTGGCCGACC AGGGCCGCAT CCTGGACCCG GAAAACGCCC TCTACCAGCC TGCAGGCGCC
GCGCCCCTGT CTGGTGCCGC CGTTGCCGGT GGCGCCGCAG TGGCTGCTGC CGGACTGGCT
GCCGCCTCGC TGGCCAGCCG CCCCCTGGAC ATGGATGCGC ACCGCGAAGG CCCTGCCACC
CTGCCCATGG ACCTGGACAT GGACCTCAAC ATGGACCTGC CCGGCGGCCT GGCCGATGCC
AGCCTGCCCG CGCAGCACGC CAGCCCCCTG CCCGCGCCGG CTCCCATGCC CAGCGAACAG
GACTTCGCAG CGCTGGAACC CACGCTGCGC GCGCCGCTGG AAGCCACGCC CTCCGCAAAG
GACGACACAC CTCGCATCGA GCCCCACGTC GAGCCACCCG TTGCATCGCT GGACATGCCC
GGCTTCCAGC CCACGGCCCA CGCCTCGCTG ACGGACGCCC TGAACCACAG CAACGCCATG
GACGGCATGC AGCCGACCGA GATGCTGTCG CTGGACATGC CCGGCACGCA GGCGGCCGAC
AGCTTCCCGG CCACCGAGCC CTCGCCCCTG ACCAGCTCCA CCACGGACGA CAGCCATGCC
AAGACCGAGC TGCTGTCGCT GGACGCCATG GAGTTCAACC TGGAAGGCCT GAGCACGGAG
GCACCCGCCC CAACGCAGGC AACGCCCCAG GCAGGCGGCG TGCTGGAGAC GGCGGCCAAG
GCCAAGCCCG AACCGGCCGA GTCGCTGGAA TTCGACCTGG GCAGCCTGTC CCTGGACCTG
GGCAACGACA CCCCTGCCGT GGCAACCCCG CCCTCGGCCC CTGAAGACCC GCTGGCCACC
AAGCTCGCTC TGGCCCAGGA ATTCAACGCC ATCGGCGACA GTGACGGAGC CCGTACACTG
ATCGAGGAAG TGATCGCCGA GGCCCACGGC GATCTCAAGG CCAAGGCCCA GCGCCTGCTG
GCCGAGATAG ATTGA
|
|---|
| Protein sequence | MHRWKLSVLA TAAVVSVALP ASEAWALALG RVNVQSALGE PLRAEVEIPQ ITAAEAEGLR
VGVASPGVFR TLGMEYNATA SQVRVSVQRR PDGSAVLRLT STQPVNEPFV DLVIDASWAS
GNLQRNYTLL LDPPNLQKLP PAVTAAAQAS APEPAAAPRR AAPAPSQAAA GNTEESRPAP
AAARRAAPAA RERAAAAPAP SEASEVRIKA GDTAGRIAAA HLPAGVSLDQ MLVAMLRTNP
KVFINGNVNR MRSGAVLTVP DEATAQATSP REARQIVAAQ SRDFNQFRRQ LASAAPAAPV
ASANREASGS VQAQVEDRKP STAAPDKLTL SKGAVKGVEA DERLAKQKQS DDQASRTAEL
QRNMSELSQI AAATKPAEGA AAAPASAASG TANGVAVPGA PTVPAAPEAA APQTTPAAPA
APVDATAAAA APTAAPDAAA NAAGSAAPAA EAAPATPAPA EPPKPKPAPA PAASIAEPSF
IDTLLEDPTI PLAGAALLAL LLGYGGYRVM QRRRAAAASS ESAFGDSQLA ADSFFGASGG
QRVDTGTSSQ LSGTSMHYSP SQLDAGDVDP VAEADVYLAY GRDLQAEEIL KEALRTDPNR
TALHQKLADI YAKRHDRKAF EAVAQTLHGL TQGKGVDWQR LADQGRILDP ENALYQPAGA
APLSGAAVAG GAAVAAAGLA AASLASRPLD MDAHREGPAT LPMDLDMDLN MDLPGGLADA
SLPAQHASPL PAPAPMPSEQ DFAALEPTLR APLEATPSAK DDTPRIEPHV EPPVASLDMP
GFQPTAHASL TDALNHSNAM DGMQPTEMLS LDMPGTQAAD SFPATEPSPL TSSTTDDSHA
KTELLSLDAM EFNLEGLSTE APAPTQATPQ AGGVLETAAK AKPEPAESLE FDLGSLSLDL
GNDTPAVATP PSAPEDPLAT KLALAQEFNA IGDSDGARTL IEEVIAEAHG DLKAKAQRLL
AEID
|
|---|
| |