| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5021 |
|---|
| Symbol | |
|---|
| ID | 5750632 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 5558653 |
|---|
| End bp | 5559540 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641300145 |
|---|
| Product | type IV pilus biogenesis/stability protein PilW |
|---|
| Protein accession | YP_001566035 |
|---|
| Protein GI | 160900453 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3063] Tfp pilus assembly protein PilF |
|---|
| TIGRFAM ID | [TIGR02521] type IV pilus biogenesis/stability protein PilW |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.667321 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCGAC GGAACAAAGG ACAGTTCATG AAGTCAGTGG CTCGGCGGCT GCGAACGGGG
GATTTCGGTA CAGGCATGCG CTGGGCAGTG CCCGCGCTGG TTCTTTTCTT GGCGGGCTGC
GCAGGCAAGC AGCCTTTAGT GCCCCCGACG AATTCTGGCT CCGGCAACGC TTCCTCCGTC
TCCAATGCCT CGATGGCTTC TGCCGCCGAG GCCGATCCCC GCCGCCGCGC AAGCATCCGC
CTGGAGCTGG CGGCTTCCTA TTTCCAGGCT GGCCGCATCG ATGTGGCCCT GGAAGAGGTG
AATCAGGCGC TGGCCGCTGA CCCCAGTTCC GCCGACGGCT ACGGCCTGCT GGCCCTGATC
TACATGCGCA ACCAGGACTG GGACCAGGCC GACGCCAGCC TGCGCAAGGC GATGTCGCTG
CGTCCCCAGG ACGGCGACCT GCAGCACAAC TACGGCTGGC TGCTGTGCCA GCGCAAGCAA
TACGCGCAAG CCCAGGAATG GCTGGACAAG GCCCTGGCCC AGCCCGGCTA CCTGGAGCGC
CCCAAGACCT GGATGGCCAA GGGCCTGTGC CTGCAGCAGG CCGGCCTGCT GGCCGAGGCC
CAGCAGGCGC TGCTCAAGGG CTATGAACTC GATCCCGCCA ACCCGGTGAT CGCCTACCAC
CTGAGCAACG TGATGCTGCA GGGCGGCGAT GCCAAGAGGG CGCAGTTCTA CATCCGGCGC
CTGAACAGCA GTCCCCAGTC CAATGCGGAA AGCCTGTGGC TGGGGATCAA GATAGAGAGG
GCGCTGCAGC AATCTGCAGC GATGCGGCAG CTGGCTGACC AGCTGCACCA GCGCTTCCCC
GAGTCCCGCC AATGGCTGGC CTACGAGCGT GGAGCATTCA ATGAGTGA
|
|---|
| Protein sequence | MPRRNKGQFM KSVARRLRTG DFGTGMRWAV PALVLFLAGC AGKQPLVPPT NSGSGNASSV
SNASMASAAE ADPRRRASIR LELAASYFQA GRIDVALEEV NQALAADPSS ADGYGLLALI
YMRNQDWDQA DASLRKAMSL RPQDGDLQHN YGWLLCQRKQ YAQAQEWLDK ALAQPGYLER
PKTWMAKGLC LQQAGLLAEA QQALLKGYEL DPANPVIAYH LSNVMLQGGD AKRAQFYIRR
LNSSPQSNAE SLWLGIKIER ALQQSAAMRQ LADQLHQRFP ESRQWLAYER GAFNE
|
|---|
| |