| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3607 |
|---|
| Symbol | |
|---|
| ID | 5749191 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 3966544 |
|---|
| End bp | 3967521 |
|---|
| Gene Length | 978 bp |
|---|
| Protein Length | 325 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641298708 |
|---|
| Product | RpiR family transcriptional regulator |
|---|
| Protein accession | YP_001564626 |
|---|
| Protein GI | 160899044 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1737] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.0198061 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGAGA CCATTCACTT TCATTCATTC ATGGAACTCC ACCCCCACCC CGCCGTACAG
GAACTGCTGC GCGCCAGCGT CGATGGCTCG CCCGCCGTCG CCCGGGTCGG CCGCTGGATG
GCCGCGCATC CGGTGCTGGC CGTCACGCTG AGCGCCGAAG AAGTGGCCAA TGCCTGCGGC
GGTTCCCTGG CCGCCGTCAA TCGCTTCGCC AAGCACGCCG GCTACGAAGG CTTTGCCGAT
TTGCGCCTGC ACCTGGGCCG CCAGCTGCAG CAGGCCCTGG AGCCCGTGAA CAAGCTGCGC
GCGGCGCATG GGCCCGAGGC CGCCACGGCA GGCGCCGTGG GCACCATGGG CGAGCAGGCT
TTCAGGCACA CGCAGCGCAA CCTGCAGGCG GCTGCGCAGG CCTGCGACCC CGGACTGCTC
GACCAACTGG CCCAGCGCAT CTGCCGCGCA CGCCGTGTGC TCTTCATGGG GTTCGGCAGC
TCCCACCATG TGGCGGCCTT TGGCGCCGAC GTACTGCAAC CCTATCTGCC GCAGGTGGTG
GAAGTGACCT CCGCAGGCGG ATCGGAACAG GCGGTGCGCC GCATGACAGG GCTGACGGAG
CAGGACGTGC TGATCGCCAT TTCACTGCCG CGCTACTCGC GCGAAGCCGT CGCGCTGACG
GCGCACGCAC GCCAGCGGGG CGCCCTGACC ATCGCCATCA CCGACGAATC CACGAGTCCG
CTGGCCCGCG AGGCCGACTA CACGCTGCTG GCGCCCGCCT CGCATCCCCT GCTGCCTTCA
TCGCCAATGG CGGCCATGGC CATGGTCGAG GCACTGGCCA CCCAGGTCAT CCGCGCCACG
CCCCAGGCCG TGCGCAGCCT GGTCGAACTG TCCGAGTCGG TGCTTCCCTA CCTGACTCCG
GACGCCGATA CCGCTTCGCC GGCGGCAGGC AAGCCGCAGC CCCAGGCCCC CCATCCCGCT
GGAAAGGATT CACCATGA
|
|---|
| Protein sequence | MKETIHFHSF MELHPHPAVQ ELLRASVDGS PAVARVGRWM AAHPVLAVTL SAEEVANACG
GSLAAVNRFA KHAGYEGFAD LRLHLGRQLQ QALEPVNKLR AAHGPEAATA GAVGTMGEQA
FRHTQRNLQA AAQACDPGLL DQLAQRICRA RRVLFMGFGS SHHVAAFGAD VLQPYLPQVV
EVTSAGGSEQ AVRRMTGLTE QDVLIAISLP RYSREAVALT AHARQRGALT IAITDESTSP
LAREADYTLL APASHPLLPS SPMAAMAMVE ALATQVIRAT PQAVRSLVEL SESVLPYLTP
DADTASPAAG KPQPQAPHPA GKDSP
|
|---|
| |