Gene Daci_3452 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_3452 
Symbol 
ID5749037 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp3787407 
End bp3787958 
Gene Length552 bp 
Protein Length183 aa 
Translation table11 
GC content65% 
IMG OID641298555 
Productputative lysozyme 
Protein accessionYP_001564473 
Protein GI160898891 
COG category[R] General function prediction only 
COG ID[COG3179] Predicted chitinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.172669 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones42 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACTCA CACCTGAAAT CGTCTCGGCA TGCACGGGCG CCACGCTGTT GCGCGCGACC 
CAATGGACCT CTGCAATCAC CGAAGCCTGC GCGCGTTATG GCATCGACTC GCCAGCTCGC
GCAGCAGCTT TCCTGGCCCA GGTGGGGCAC GAATCTGGCC GCCTGGTCTA TGTGCGCGAG
ATCTGGGGTC CTACTGCGGC ACAGCTGCGG TACGAGGGCC GCCGTGACCT GGGGAACATC
GAGCCCGGCG ACGGCAAGCG GTACATGGGC CGAGGGCTCA TCCAGGTCAC CGGTCGGGAC
AACTACAAGG CGGCGACTCG GGCCTTGCGT GCCGTCGAGC CTCGAGCACC AGACTTCGAG
CACGACCCCG CGGCGCTTGA ACAGCCTGCA TGGGCAGCCT TGTCCGCAGC CTGGTTCTGG
CACAGCCGAG GCTTGAACAC CCTTGCCGAC CGCGGCGATT TCTTGGGCAT CACCAAGAAG
ATCAACGGCG GCACGAACGG CTTGGATGAC CGCTTAGCGT TGTGGGCGGC TGCCAAGAAG
GTGCTGGTGT GA
 
Protein sequence
MKLTPEIVSA CTGATLLRAT QWTSAITEAC ARYGIDSPAR AAAFLAQVGH ESGRLVYVRE 
IWGPTAAQLR YEGRRDLGNI EPGDGKRYMG RGLIQVTGRD NYKAATRALR AVEPRAPDFE
HDPAALEQPA WAALSAAWFW HSRGLNTLAD RGDFLGITKK INGGTNGLDD RLALWAAAKK
VLV