| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_2521 |
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| Symbol | |
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| ID | 5748090 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 2791897 |
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| End bp | 2796426 |
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| Gene Length | 4530 bp |
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| Protein Length | 1509 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641297609 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_001563544 |
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| Protein GI | 160897962 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGGCA AACCCGCAGC CCGTATCACC GACAGCGTCG TCAAGGGCAA GATCGTCACC
GGTTCGCTCA CCGTGCTCAT TGGCAGCCAG GGGGGCCTGG CCTGCTCCGT CTGCCCGGGC
GGCATCACCG TCGGCTCCCC CGTCAACCCC CAGCTGGGCG CCAAGGTCCT GCTGGGCGCA
CAAGACCTGG ACTTCGCCCT GCCATCGGCT GCGCTGCCTG TGGCCTGGCA GCGCCAGTAC
AGCAGCTACG TCAACCCCGA GCACGGCGCC GCCTGCGGCC TGCTGGGCCA TGGCTGGCAC
CTGCTGCAGG AGCTCAGCAT CCGGCTGCAG GACGAGGCCA CCTTGCTGCT GGATGCCAGC
GGCCGCGTCA TCACCTTCGA CCAGCCTCTG GTGCCGGGCG GCCAGCTGCA CAGTGCCAGC
GAAGACCTCT GGCTGCTGCG CGGCGGCAGC ACGGAGCCGG ACGGCGGTAC CGCGCCTTGG
GCCGCCAATC CTCGCTGGTC GCATGTGGAG CAGGCACTGG TGCGCAACCC GCAAGCCATC
CTCGCGGTCA GCGGCGATGG CGACACCCTC TGGGGCTTTG GTCCTGCGCC CGGTGAACCT
GTCGACGGTC CCTGGCGCCT CATGGCCCAG ATCGACCGCT TCGGGCGCCG CCAGCTCTAC
CACTACAGCG ACGGCACCAC GCCCGAGGCC GGCCACAGTG CGAGCAAGGA CCTCATCCCC
GCAGGCCGCC TGGTCTCGCT GAGCGACGGC ACGGGCCGGC GCTACCGCCT GCTGCACCAG
CGCATCCATG GGGGCAAGGA TGCGCAGGGA CTGAACGGAC TATGGGGCGC CGACGACGGC
TGGCGAGTCA CAGGCGTGGA CCTCACACAG GACCCGTTGA ATCCCCTGTC CACCCCCATC
GCTCCCATCA CGCTCGTGCG CTACGGCTAC AGCAGCGCAG GCGACCTCAT CACCGTCCAC
GACCGCGCAG GCCAGCTCGT GCGTGAATTC GAATGGGACC ACCACCGCAT CAGCGCCCAC
CGCCATGCCA GCGGACCCTG GCACCGCTAC CGCTACGAGA GCGCCCAGCC CGGCGCCCGC
GTCATCGAGC ACAGCAACCA GGAAGGCCTC AGCTACCGCT TCGACTACCT GGCCCAGCCC
CCGGGCCCTG ACGGCCAGCC GCGTGCCGCC ACCCGCGTCA GCGACAGCCT GGATCGCATC
GAGACCTACT ACTTCGAAGG CGCAGCGGGC CTGTCGCGCC TCATCGCCCA CCACAAGGCC
GATGGCAGCC GCTGGCTGCA GGCCTACGAC AGCTTCGGCC GCCTGGCCTC GCGCACCGAC
CCGCTGGGGC GCAGCGTGCA CCTCAGGCGT GATGGCCAGG GCCGGCTCAT CGGCGTGCAA
CTGCCCGACG GGCGCAGCAC CCAGCAGGAA CACGACGAAG CCACCGGCCG CCTGCTGCAA
AGCACTGACA CCGCAGGGGC CACCACCGGC TACCAATACG ACGCCTGGGG CCGCCTCACC
CAGATCACCC AGGCCGATGG CAGCACCGAG CGCTACCACT ACCCCGACCC CCAGGAAGCG
CCGCTCACCT GCGACAGCCC CCGGCGCATC GAAGACGCCC AGGGTGGCAG CAAACAGCTG
GCCTGGAGCG ACGCGGGCCA ACTGCTCAGC TACACCGACT GCTCGGGCCA CAGCACGCAC
TACCACTACG ACCGCTGGGG GGCGCTCATC GAAGTGGACA ACGCCCTGGG CCAGCGCCAA
CGCCACCAGC GCGACGGCCA GGGGCGCATC GTGGCCAGCG AACTGCCCAA CGGCCAGATC
GAGCGCTACC ACTATGACAG CGCAGGCCAC CTCACGCGCA TCGATCCAGC CCAGCCTGCG
GGCACCTCCA GCGAAACCCA GACCGCCGAC CCCAGCATCC ACCTGCGCTA CGACCTCTGG
GGCAGGCTGG TCCAGCGAAC ACATGGCGGC CTCACCCTGG CCTTCGAATA CGACAGCGCC
GGCCGCCTCC TGCGCCTCGT CAACGAGAAC GGGTCGCAAA GCCGCTTTGC CTGGGACGCG
CTGGACCGGC TCGTGCAGGA AGAAGGCTTC GACCAACGGC TGCAGCGCTA CCGCTGGGAC
GCGGCAGGCC AGCTCATGGA AGCCACGGAC GGCAACGCCG CGCAGCAAAG CAGCAGCCAC
TATCGCTGGG ACGAAGGCGG GCGCCTCGCC GAACGCCAGC TGCCCGCTAC GCCCCACGCG
CCCGCACAAA CCCACCGCTA CGAATGGGAT GCGGCCGGGC GCCTCACGGC GGCCAGCGTC
TGGCAGCACA CCGGCGAGAA CACCGCAGAG AACACCATCC AACGGCAAAG CCGCATAGCA
TTGGAACGCG ACGCCCTGGG CCGCATCACG GCAGAAGTGC AGCAGCTGTA CCGCCCAGGC
AAGGACGGCA ACGTGGGCGG CGGCGCAGAC CAGATCGAAT ACGAACACCG CATCGCCCAC
ACGCTGGACC GCCTGGGCGG ACGCCAGCAC AGCCAGCTGC AAGGCCTGGG AGAGATCGCC
TGGCTCACCT ACGGCTCAGG CCATGTGCAC GGACTGCAGC TCAACGGAGC CAGCCTCATC
GACTTCGAGC GCGACAACCT GCACCGCGAA GTCCGCCGCA GCCTGCACCC ACCCACCCCT
GCAGCAGACG CACACCACCC CCTGCAGGTG CAACGCCAAT GGGACAGCCT GGGCCGCCTC
ACGGCCCTGG GCACCACGGG CCTGCAAGCG CTGCAGCCCA CCGACGCCCA GGCCCACGCC
CTCATCGGCC AGATCCTCGG CCGCCGCTAC CACTACGACA GCCTGGGCCA GCTCGTCGCC
ATAGAACAGG CCGGCGCCCC GGGCCAGGCC GCGCAACTGC TGCGCTACGG CTACGACAGC
GCCGGGCGCC TGAGAGCGGC CACCGACAGC CAGCACCCCC AGACCACCAC CCGCTGGCAG
CTCGACCCCG CAGGCAACCG CCTGCCAGCA CCCGGTGCAC CCGGCGCAAC GGGCCAGACG
AACACCCAGG ACAACTGGGC CGCCCAGGTC CACGCCCACT GGCGGCACAC CGACTTCAAC
CTCATGGGCC TGGGCCACCT TGCAGGCCAG CGGCAAGGCC CCGTGCAGCG CTGGGAAGAC
AACCGCATAG GCTTCACCGA AGACCGCGTC TGGCGCTACG ACCCCTGCGG CAACCGCATC
GCGCAAATGC AGGCAGACCA CAGCCAGCAG CAACTGCACT ACGACGGAGC CCACCAGCTC
ATAGCGGTGC GCAGCAGCCA GATCCAGGGC AACGCCGAGC AACTGCGCCA CCACAGCCGC
TACACCTACG ACGCCCTGGG CCGCAGGCTC AAGCAGCAAG TGGAAAGCGC AGACGGCAAC
CCCACCCGCA CCCACTACTA CGGCTGGGAC GGAGACCGCC TCATCCACAC CGAACGCCAG
CAGCATGGCG ACGACACCCG CCACATAGAA CACACCATCT ACGAACCCGG CAGCTTCACG
CCCCTGGTGC GCCTGAGCAC TACGGCCAGC GGCGACCCCC AAAACGAGCC CCACCTGCTG
GTGCAGGCCA TCGCCGCAGG CCTGCCCGAC CAGGACGACC CCAATCACAG GCCGGCCCTG
GCCCTGATGC AAACCATGCT CAGCGCCATG CCGAGGGACA TGCAGCAAGA CGCCGCCCGC
CACCTGCGCC ACACCCTGGA GCACGGCCTG CCGCCCGGCG CCCAAGCCAT GCTGGGCGAA
CAGGCCGAGA GCACCGCGCG CCTGCTCAGC GGCATGCAGG CAAAGCTGCA GGAACAGGAA
AAAGAACAGC ACGCCCGCAT CGCCATCCAC CACTACCACT GCGACCACCT GGGCACACCC
ATGGCCCTGA CGGACCAGAC CGGCCAGGTG GCCTGGGCCG CAAAGCTGGA CCCCTGGGGC
AATGTGCTGC AGGAATACAA CCCGCAAGGC ATCCACCAGG CGATCCGGCT GCCGGGGCAG
CACCATGACA GGGAAACGGG GCTGTATTAC AACCGGCATC GGTATTACGA TCCGGTGGTG
GGGAGTTATG TGAATCAGGA TCCGATTGGG TTGAATGGAG GCGTTAATTA TTACAATTAC
CCAAAAAATC CAAATATTGG CATAGATCCA TGGGGGCTGG TCGATTTAAA TCTCTTTCCG
GAGTCTGAAA ATATTCGAGG TTTTGCAAAC AAGGTTCCAC CTAAGTCAGG GGTTTATCAA
GTAGGAGCAC ATGGCAACCC TAGCTTGATT GTTGATGACA AGGGAAAAAT TCTGTCCCCC
TCAGACTTGG CGAAGAAAAT CAAGAGCGAC CCAAACTATA AAAGTGGAAC ACCTGTGGAA
TTACTTTCTT GCAACACTGG AAAAGGAAAT GATCCATATG CGAAAAAACT AGCAAACGAA
TTGGGCGCAA AAGTAAGTGC ACCGGATCAA TACATGTGGT ATTCCAGTGA TGGAAGCACT
ACGCCGATGG GAATGACATC GGCAGGAGCT CAAGATAAGA CCGCCCCTGG AAAGATGATA
GATTTCAACC CTTCGTCAAA GGGGAAGTGA
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| Protein sequence | MSGKPAARIT DSVVKGKIVT GSLTVLIGSQ GGLACSVCPG GITVGSPVNP QLGAKVLLGA
QDLDFALPSA ALPVAWQRQY SSYVNPEHGA ACGLLGHGWH LLQELSIRLQ DEATLLLDAS
GRVITFDQPL VPGGQLHSAS EDLWLLRGGS TEPDGGTAPW AANPRWSHVE QALVRNPQAI
LAVSGDGDTL WGFGPAPGEP VDGPWRLMAQ IDRFGRRQLY HYSDGTTPEA GHSASKDLIP
AGRLVSLSDG TGRRYRLLHQ RIHGGKDAQG LNGLWGADDG WRVTGVDLTQ DPLNPLSTPI
APITLVRYGY SSAGDLITVH DRAGQLVREF EWDHHRISAH RHASGPWHRY RYESAQPGAR
VIEHSNQEGL SYRFDYLAQP PGPDGQPRAA TRVSDSLDRI ETYYFEGAAG LSRLIAHHKA
DGSRWLQAYD SFGRLASRTD PLGRSVHLRR DGQGRLIGVQ LPDGRSTQQE HDEATGRLLQ
STDTAGATTG YQYDAWGRLT QITQADGSTE RYHYPDPQEA PLTCDSPRRI EDAQGGSKQL
AWSDAGQLLS YTDCSGHSTH YHYDRWGALI EVDNALGQRQ RHQRDGQGRI VASELPNGQI
ERYHYDSAGH LTRIDPAQPA GTSSETQTAD PSIHLRYDLW GRLVQRTHGG LTLAFEYDSA
GRLLRLVNEN GSQSRFAWDA LDRLVQEEGF DQRLQRYRWD AAGQLMEATD GNAAQQSSSH
YRWDEGGRLA ERQLPATPHA PAQTHRYEWD AAGRLTAASV WQHTGENTAE NTIQRQSRIA
LERDALGRIT AEVQQLYRPG KDGNVGGGAD QIEYEHRIAH TLDRLGGRQH SQLQGLGEIA
WLTYGSGHVH GLQLNGASLI DFERDNLHRE VRRSLHPPTP AADAHHPLQV QRQWDSLGRL
TALGTTGLQA LQPTDAQAHA LIGQILGRRY HYDSLGQLVA IEQAGAPGQA AQLLRYGYDS
AGRLRAATDS QHPQTTTRWQ LDPAGNRLPA PGAPGATGQT NTQDNWAAQV HAHWRHTDFN
LMGLGHLAGQ RQGPVQRWED NRIGFTEDRV WRYDPCGNRI AQMQADHSQQ QLHYDGAHQL
IAVRSSQIQG NAEQLRHHSR YTYDALGRRL KQQVESADGN PTRTHYYGWD GDRLIHTERQ
QHGDDTRHIE HTIYEPGSFT PLVRLSTTAS GDPQNEPHLL VQAIAAGLPD QDDPNHRPAL
ALMQTMLSAM PRDMQQDAAR HLRHTLEHGL PPGAQAMLGE QAESTARLLS GMQAKLQEQE
KEQHARIAIH HYHCDHLGTP MALTDQTGQV AWAAKLDPWG NVLQEYNPQG IHQAIRLPGQ
HHDRETGLYY NRHRYYDPVV GSYVNQDPIG LNGGVNYYNY PKNPNIGIDP WGLVDLNLFP
ESENIRGFAN KVPPKSGVYQ VGAHGNPSLI VDDKGKILSP SDLAKKIKSD PNYKSGTPVE
LLSCNTGKGN DPYAKKLANE LGAKVSAPDQ YMWYSSDGST TPMGMTSAGA QDKTAPGKMI
DFNPSSKGK
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