| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_1772 |
|---|
| Symbol | |
|---|
| ID | 5747330 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 1970650 |
|---|
| End bp | 1971810 |
|---|
| Gene Length | 1161 bp |
|---|
| Protein Length | 386 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641296852 |
|---|
| Product | putative sigma54 specific transcriptional regulator |
|---|
| Protein accession | YP_001562799 |
|---|
| Protein GI | 160897217 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACACCC GTCTGCCCAC CTGGCCGCCC GGCAAGTCCT CGGCAACACC TGCGCCCGTA
CCTGCGCCCG CGCCCGCAGC CTCTGCCGCG CACGATGACG GCGCCGCGCC CGCGCCGTGG
ATACTGCAAG ACCCGGCCTC GCAGGCCCTG CTCAAGACCA TGGGACAGGT GGCCGCCAGC
GAGGCCGGCG TCCTCATCCT GGGCGACAGC GGCGCCGACA AGGAAATGGT GGCCCGCCAC
ATCCACCGCC TGAGCCCGCG CCGCCGTGGC CCCTTTGTCG CCGTCAACTG CGGCGCGCTG
TCCGAGGCCC TGATCAACGC CGAGCTCTTC GGCCATGAAA GCGGTGCGCT GACGGGTGCC
TTCGGCAACC TGCCCGGCCG CTTCGAGGAC GCCCACGGCG GCACCCTGCT GCTGGACGAG
ATCGACGACC TGCCCCTGCA CATCCAGAGC AAGCTGGTGC GCGTGCTGCA GGACAAGGCG
GTCACCCGCA TCGGCGCCAG CCAGCGCACG CCGGCCGATG TGCGCGTGCT CGCGGCCAGC
AGCGCGCCGC TGCACACCAA GGTGGCGGCG CGGCGCTTTC GCGAAGACCT GTACTACCTG
CTCGATGTCG TCACCCTCAC CGTGCTGCCG CTGCGCCAGC GCCCGGCCGA CATCCTGCCG
CTGGCGCGCC ACTTCATCGC GAGCTACTGC CAGCGCATGC GCTACGCGCC CATGGCACTG
AGCCAGGACG CGCAGCGCAA GCTGCTGGAG CACGACTGGC CCGGCAACAG CCGCGAGCTG
GAGAACGTCA TCCACCGCAG CCTGCTGCTG ACCCAGGGCA TGCACATCGG CGCGGGCGAC
CTGCACATCG CCAGCAGCCA GGGCGAGCCC GATCCCGTCC CCACACGCGA GGCCGAACAC
GGCGCCCAGG CCGCCGCCGC CGAACTGGCC CTGGGCGAAG CGCTGGACAG CCTGTGCGAC
GTGCATGCCG AAGGCCTGGA GCAGCACGTG CTGGGCGCCC TGCTGCTCAA GGCCTGGCAG
CGCAACCGCG GCAACCAGGT GCAGACCGCA CGCCAGCTGG GCATCAGCCG CAGCGTGGTG
CGCGCGCGGC TGCAGCGCCT GGGCCAGGTG CCGGGCGAGG CCGCGCCACC GTCTTTCCCA
TCGTCCCCGG AGATCCCATG A
|
|---|
| Protein sequence | MNTRLPTWPP GKSSATPAPV PAPAPAASAA HDDGAAPAPW ILQDPASQAL LKTMGQVAAS
EAGVLILGDS GADKEMVARH IHRLSPRRRG PFVAVNCGAL SEALINAELF GHESGALTGA
FGNLPGRFED AHGGTLLLDE IDDLPLHIQS KLVRVLQDKA VTRIGASQRT PADVRVLAAS
SAPLHTKVAA RRFREDLYYL LDVVTLTVLP LRQRPADILP LARHFIASYC QRMRYAPMAL
SQDAQRKLLE HDWPGNSREL ENVIHRSLLL TQGMHIGAGD LHIASSQGEP DPVPTREAEH
GAQAAAAELA LGEALDSLCD VHAEGLEQHV LGALLLKAWQ RNRGNQVQTA RQLGISRSVV
RARLQRLGQV PGEAAPPSFP SSPEIP
|
|---|
| |