| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DET1088 |
|---|
| Symbol | |
|---|
| ID | 3229623 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides ethenogenes 195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002936 |
|---|
| Strand | - |
|---|
| Start bp | 989902 |
|---|
| End bp | 991509 |
|---|
| Gene Length | 1608 bp |
|---|
| Protein Length | 535 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637120652 |
|---|
| Product | terminase, large subunit, putative |
|---|
| Protein accession | YP_181803 |
|---|
| Protein GI | 57234156 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4626] Phage terminase-like protein, large subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAATGC GAAAACTGAA AAACTACAAG CCGACCCGCT TCATGGCCGA GTCCTCTCAC
TACAGCAAGC AGATGGCGGA TTTCGCTGTG ATGTTCATCG AGCAGCTCTG CCATACCAAA
GGCACATGGG CGGGAAAGCC CTTCGAGCTT ATCGACTGGC AGGAAAGAAT CATCCGCGAC
CTGTTCGGAA CGCTGAAACC AAACGGCTAC CGCCAGTTCA ACACGGCCTA CATCGAGATA
CCAAAGAAGA TGGGCAAGTC AGAGCTTGCC GCTGCGGTCG CCCTGCTTCT TTGCTGCGGC
GACGGAGAGG AACGCGCCGA GGTCTACGGC TGCGCTGCCG ACCGCCAGCA GGCCACCATC
GTTTTTGATG TGGCTGCGGA TATGGTCAGG ATGTGCCCTG CCTTAAACCG ACGCGTGAAG
ATACTGGCCT CCCAGAAGCG GATCATCTAC GAGCCGACGA ACAGCTTCTA TCAGGTGCTG
TCCGCCGAGG CCTATTCGAA GCACGGTTTC AATATCCACG GCGTGGTCTT TGATGAGCTG
CATACCCAGC CCAACCGAAA GCTCTTTGAT GTTATGACCA AGGGCTCCGG CGACGCCAGA
ATGCAGCCGC TCTACTTCCT GATCACGACT GCCGGAAACG ATACGAACAC CATCTGCTAC
GAAGTCCACC AGAAAGCGCA GGACATCCTT GACGGCAGAA AGGTTGATCC GACCTTCTAT
CCGGTCATCT ACGGTGCGGA CACTTCCGAG GACTGGACAG ACCCGGAGGT CTGGAAGAAG
GCAAATCCCT CGCTCGGTAT CACGGTCGGC ATCGACAAGG TGGAAGCCGC CTGCGAGTCG
GCAAAACAAA ATCCCGGCGA GGAGAACTCC TTTAGACAGC TCCGCTTAAA TCAATGGGTA
AAGCAGGCGA TTCGCTGGAT GCCAATGGAG AAATGGGACG CCTGTGCTTT CCCGGTAAAT
GAGGACGACC TCGAAGGCCG TGTCTGTTAC GGCGGCCTTG ACCTCTCCTC CACCACAGAT
ATCACTTCCT TTGTGCTGGT CTTCCCGCCA AGGGATGAGG ATGACAAGTA TGTGATCCTT
CCGTACTTCT GGGTGCCGGA GGATACGCTG GATCAGCGTG TCCGGCGTGA CCATGTGCCT
TACGACACTT GGGAAAAGGA AGGATACCTC GAAACCACGG AGGGCAACGT CATCCACTAC
GGCTACATCG AGAAATTCAT CGAGCGGCTG GGCGAGCGGT TCAACATCCG TGAGATTGCC
TTCGACCGCT GGGGAGCCGT CCAGATGGTA CAAAACCTTG AGAACATGGG CTTCACTGTC
GTTCCCTTCG GTCAGGGCTT CAAGGATATG AGCCCGCCCA CGAAAGAGCT GATGAAGCTG
ACACTGGAAA AGAAACTCGC CCACGGCGGC CACCCGGTGC TCCGCTGGAA TATGGACAAC
ATCTTCATCC GTACTGATCC TGCCGGAAAC ATCAAGGCCG ACAAGGAGAA GTCCACGGAG
AAGATCGACG GTGCCATCGC AACCATCATG GCACTTGACC GGGCGATCCG CTGCGGCAAC
GACAACGGTG CTTCTGTGTA TGACGGCAGA GGCATCCTTT TCATATAG
|
|---|
| Protein sequence | MPMRKLKNYK PTRFMAESSH YSKQMADFAV MFIEQLCHTK GTWAGKPFEL IDWQERIIRD
LFGTLKPNGY RQFNTAYIEI PKKMGKSELA AAVALLLCCG DGEERAEVYG CAADRQQATI
VFDVAADMVR MCPALNRRVK ILASQKRIIY EPTNSFYQVL SAEAYSKHGF NIHGVVFDEL
HTQPNRKLFD VMTKGSGDAR MQPLYFLITT AGNDTNTICY EVHQKAQDIL DGRKVDPTFY
PVIYGADTSE DWTDPEVWKK ANPSLGITVG IDKVEAACES AKQNPGEENS FRQLRLNQWV
KQAIRWMPME KWDACAFPVN EDDLEGRVCY GGLDLSSTTD ITSFVLVFPP RDEDDKYVIL
PYFWVPEDTL DQRVRRDHVP YDTWEKEGYL ETTEGNVIHY GYIEKFIERL GERFNIREIA
FDRWGAVQMV QNLENMGFTV VPFGQGFKDM SPPTKELMKL TLEKKLAHGG HPVLRWNMDN
IFIRTDPAGN IKADKEKSTE KIDGAIATIM ALDRAIRCGN DNGASVYDGR GILFI
|
|---|
| |