Gene DET0486 details

Gene Information

• Locus tag: DET0486
• Symbol: rplE
• ID: 3230243
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dehalococcoides ethenogenes 195
• Kingdom: Bacteria
• Replicon accession: NC_002936
• Strand: +
• Start bp: 451305
• End bp: 451844
• Gene Length: 540 bp
• Protein Length: 179 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 637120052
• Product: 50S ribosomal protein L5
• Protein accession: YP_181230
• Protein GI: 57234774
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0094] Ribosomal protein L5

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.000104072
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTTAAGG TAGAGGAACG TTACACTAAC GCCGTACCTG AACTTCAGAA GGCTTTCAAG 
TACGAAAATA TTATGCAGGT GCCCAAGCTG GTCAAAGTAG TTATAAACAC CGGTGTAGGT 
GAGGCTGTGT CCAACTCCAA GGCACTGGAA ACTGCGGAAG CGGACATTGT AGCTATAGCC 
GGCCAGCACC CGGTAATCAC CCGTGCCAAG CGTTCTGTGG CTAACTTTAA GCTGAGAGCC 
GGTATGCCCA TCGGTTTAAA GGTCACCCTG CGCGGACAGA GAATGTATGA TTTCCTGAAT 
AAACTCTTCT TCATTACGCT GCCCCGGGTA CGTGATTTTC AGGGTGTTTC AAATACCGCT 
TTTGACGAAC ACGGCAACTA TACTTTAGGT TTTAAAGACC ATTCGGTTTT CCCTGAGATT 
GACTTTAACA AGATTGAGAA ACCGCGCGGT CTTGAAGTTT GTATTGTAAC TACCGCCAAC 
ACACCTGAAG AAGGCAAGAA GCTCCTGGAA CTCTTGGGCA TGCCTTTCAG TAAGGATTAG 

 

Protein sequence

MLKVEERYTN AVPELQKAFK YENIMQVPKL VKVVINTGVG EAVSNSKALE TAEADIVAIA 
GQHPVITRAK RSVANFKLRA GMPIGLKVTL RGQRMYDFLN KLFFITLPRV RDFQGVSNTA 
FDEHGNYTLG FKDHSVFPEI DFNKIEKPRG LEVCIVTTAN TPEEGKKLLE LLGMPFSKD