Gene Cthe_2223 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCthe_2223 
Symbol 
ID4811088 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium thermocellum ATCC 27405 
KingdomBacteria 
Replicon accessionNC_009012 
Strand- 
Start bp2652496 
End bp2653179 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content41% 
IMG OID640107629 
ProductLmbE-like protein 
Protein accessionYP_001038618 
Protein GI125974708 
COG category[S] Function unknown 
COG ID[COG2120] Uncharacterized proteins, LmbE homologs 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTAATA TATTGGTTGT GGCGGCACAT CCCGATGATG AACTGCTTGG AGTCGGAGGT 
ACGATTTGCA GACACGTCAA TAACGGAGAT GTGGCAGATT GCCTGATTTT AGGCGAAGGT 
ATGACTTCCC GGGCGGAAAA AAGAGAAGAT TGGGACAAAA ACACCTTAAG TGAGCTGAAA 
AGTCAGACGC TGAAGGCCGC TGAGATTCTT GGATTTAGAA ATGTTTACTT TTCCGATTTT 
CCCGACAACC GGTTTGATTC CGTGGATTTG CTGGACATTA TAAAGGAAGT GGACAAGTAT 
ATTCAAAGAC TCAAACCTCA AATAATATAT ACCCATCACT ATGGAGATTT GAATATTGAC 
CACAGAAGAA CCTTTGAAGC GGTAATTACT GCTTCAAGGC CTGTGGGAGA ATACCCGGTA 
AAAGAAATAT ACTGTTTTGA GACTCCGTCA TCCACTGAAT GGAATTTTAA ATATGGAGGC 
AATGTATTTA AACCTAATGT TTTTATAGGT ATTGACGATA CAATTGATGC CAAACTTAAG 
GCTATGGAGT GTTATAAATC CGAGATAAGA GATTATCCCC ATCCGAGGTC GATAAAAGCA 
TTGGAAATAA TTGCAGCAAG GTGGGGAACG GTAGTGGGCA AAAAATATGC GGAAGCCTTT 
GAATTGATCA GAAAAGTTGT CTGA
 
Protein sequence
MSNILVVAAH PDDELLGVGG TICRHVNNGD VADCLILGEG MTSRAEKRED WDKNTLSELK 
SQTLKAAEIL GFRNVYFSDF PDNRFDSVDL LDIIKEVDKY IQRLKPQIIY THHYGDLNID 
HRRTFEAVIT ASRPVGEYPV KEIYCFETPS STEWNFKYGG NVFKPNVFIG IDDTIDAKLK 
AMECYKSEIR DYPHPRSIKA LEIIAARWGT VVGKKYAEAF ELIRKVV