Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cthe_0539 |
Symbol | |
ID | 4808288 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium thermocellum ATCC 27405 |
Kingdom | Bacteria |
Replicon accession | NC_009012 |
Strand | + |
Start bp | 657907 |
End bp | 658590 |
Gene Length | 684 bp |
Protein Length | 227 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640105953 |
Product | ABC transporter related protein |
Protein accession | YP_001036968 |
Protein GI | 125973058 |
COG category | [V] Defense mechanisms |
COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.0632704 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGAGATAT TGAGGGTTGA AAACGTGACA AAAACGTACG GCACCGGAGA GAACATGGTC AGGGCATTGG ACGGTGTTTC ATTTTCGGTA AAAAAGGGTG AATTCATTGC AATTGTAGGG CCATCGGGTT CGGGCAAATC CACACTTTTG CATATTTTAG GCGGAGTGGA CAAACCTACA AGCGGCAAGG TTTTTATGGA CGGCAAGGAT GTTTATGCTC AAAATGACGA GCAGCTTGCA ATTTTTCGCC GCCGGCAGGT GGGGCTCATA TATCAGTTTT ACAACCTTAT ACCCGTGTTA AATGTAGTGG AGAATATTAC ACTTCCGGTA CTTATGGACG GAAGAAAAGT GAACAAAGAA CGACTGGAAG AGTTGATTGA GACTTTGAAT CTTAAAGGAA GGGAAAATCA TTTGCCCAAT CAGCTGTCGG GAGGCCAGCA GCAAAGGGTG TCCATTGGCA GGGCATTGAT AAATGCTCCT TCGGTGGTGC TTGCGGACGA ACCCACGGGA AACCTGGATT CGAAAAACAG CCAGGAAATT GTGGAACTTT TGAAACTCTC CAATAAAAAA TACAATCAAA CCTTGATTGT TATTACCCAT GACGAAAATA TTGCGTTGCA GGCAAACCGA GTAATTGCCA TTGAGGACGG GAGGATCATT CGTGACGAGG TGATTCGGCA ATGA
|
Protein sequence | MEILRVENVT KTYGTGENMV RALDGVSFSV KKGEFIAIVG PSGSGKSTLL HILGGVDKPT SGKVFMDGKD VYAQNDEQLA IFRRRQVGLI YQFYNLIPVL NVVENITLPV LMDGRKVNKE RLEELIETLN LKGRENHLPN QLSGGQQQRV SIGRALINAP SVVLADEPTG NLDSKNSQEI VELLKLSNKK YNQTLIVITH DENIALQANR VIAIEDGRII RDEVIRQ
|
| |