| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Csal_1309 |
|---|
| Symbol | |
|---|
| ID | 4027763 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chromohalobacter salexigens DSM 3043 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007963 |
|---|
| Strand | + |
|---|
| Start bp | 1493121 |
|---|
| End bp | 1493978 |
|---|
| Gene Length | 858 bp |
|---|
| Protein Length | 285 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637966488 |
|---|
| Product | rhomboid-like protein |
|---|
| Protein accession | YP_573363 |
|---|
| Protein GI | 92113435 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTACAAGT TGCTGGAACT GCCTCGCCAA CAGGACATCG TCGCACTGCG CCGCGCGCTG
TGGGCGCACC GCATTGGTCA TCAGGTGACC GAGGAGGAGA CGGTGCAGGT GGTGTGGCTG
GCCGATCCGC GCCAGCGTGA CGACGCCGCG CGCCTGATCG AGCAATGGCA CCGCGGCGCA
TTGTCCGAGC GTCCAGCGTC ACCCCCCAAG CGTCCCTCGA CAAGCCTGTT CGGCAGTGCC
TTTTCACAGG CTCCGCTGGC GGCGGCCTGC GTCGCGCTGT GTCTCGCGGT GTTTGCTTTG
ATGGCGCTGT TCGGCGATCG GGTGGTGGCC GCACTGACCT TCGTGCCGGT GGAGCCCTCG
CAGGGACGCT TGATGGTGGG CACGCTGGGT GACGTGGTCG CCAGCGGTCA GCTGTGGCGC
CTGCTGTCGC CGACCGTCAT GCATTTCGGC TGGATGCATC TGGTGTTCAA CATGCTGTGG
CTGTGGTATT TCGGACGCCA GGTCGAAGCG TTGCAAGGGC CGCTGCGGCT TGCGGCGATC
GTCGTCGTGG CGGCGCTGGC CTCCAATCTG GCGCAGTATG CCACGGGCAC GGTGCTGTTC
GGTGGCATGT CCGGCGTCGA TTATGCCCTG CTGGGCTATG TCTGGCTGAT GGCCCGACGG
GCGCCTGCCA GTGGATTCTT CGTGCCGCAA ATGCTTGTGG TGTTCATGCT GGCCTGGATG
GTATTCACCA TGACCGACAT GGCGGGGCTG TTCGGGTTCG GCAACGTTGC CAACGAGGCG
CATCTCGGCG GTTTGCTGGT GGGGCTGGCC TGGGGCTGGT GGGCCGGTGG ACGTGCCGCG
AAAGGAGACG GAACATGA
|
|---|
| Protein sequence | MYKLLELPRQ QDIVALRRAL WAHRIGHQVT EEETVQVVWL ADPRQRDDAA RLIEQWHRGA
LSERPASPPK RPSTSLFGSA FSQAPLAAAC VALCLAVFAL MALFGDRVVA ALTFVPVEPS
QGRLMVGTLG DVVASGQLWR LLSPTVMHFG WMHLVFNMLW LWYFGRQVEA LQGPLRLAAI
VVVAALASNL AQYATGTVLF GGMSGVDYAL LGYVWLMARR APASGFFVPQ MLVVFMLAWM
VFTMTDMAGL FGFGNVANEA HLGGLLVGLA WGWWAGGRAA KGDGT
|
|---|
| |