| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_7193 |
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| Symbol | |
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| ID | 8363387 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 8987010 |
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| End bp | 8988656 |
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| Gene Length | 1647 bp |
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| Protein Length | 548 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 644969327 |
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| Product | glycoside hydrolase family 39 |
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| Protein accession | YP_003126794 |
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| Protein GI | 256426141 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3664] Beta-xylosidase |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0114061 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAAGAC GTAAATTTTT GAAACAGGCA ATCGTTTCAG CTGCGGGTAG TGCATTAATA
CCCGGCATTG TAGCAGGCCG TTCACTATGG GAAGAACAAC CTCCGTTGAT AATTGACACC
AAAGTGCAGG GACGCACATT TTCACACTTC TGGAGTAAAT GTGTAGGAGC AGGCCGCGCT
GGAGAAGTAC TCCGTACGGG ATCCCCCTGG CTGGAACACC TGCAGTTGGG CCAGAAACAT
TGCGGCTTTC AATATTGTCG TCTTCACGGG ATCTTTCATG ATGATATGTC TGTTTACCAG
GGTGGCGTTT ATAATTGGCT CCGGGTAGAC GATGTGATCA ACAGAATGTT GAAAGCCGGT
GTAAAACCCT TTGTAGAGCT AAGTTTCTTT CCCAGGGAAA TGGCCGGCGG CGCTGCTACT
GCTTACTGGT GGAAAGCGAA CGTTTCCCCT CCGGGTGATT TTTCAAAATG GTCACAACTG
GTAACCAACT TCGCCAAACA TTGTATCGAG AAATTCGGAA TAGGAGAAGT CAGCAGCTGG
TACTTCGAAG TCTGGAATGA ACCGAATATC CGGGCTACCT GGGATGGCAG TAAAAGCCAG
TATTTTGCGA TGTACAAGGC GACTGCACAG GCGCTTAAAA CCGTTTCTCC GCAATTGCGT
GTAGGTGGTC CTGCCACCAG CAACTTTGTG GGTGATGGCC GTTTTGATGG CGAAACAGAA
GATAAATCAA AGATATCAGT GACAGCAGGA GATCCGGAAG CATTGAAGTG GAAAGGCGTG
TGGATAGAAG ATTTCCTGGA ATATTGTAAA CAACAGCAGG TACCTGTTGA CTTTATATCT
ACCCATCCAT ATCCGACGGA TATGCCGTTT AACAATGGTA AAGGCACACT GAGAGGTGTG
GATGCTACGC TGAAAGACCT GCAATGGTTG CGGGCAGTTG TGGATAAAAG CGCCTTTCCA
AAGGCAGAGA TCCATCTCTC TGAATGGGGA ACCAGTTCCT CCGGCAGAGA TGCTATGCAC
GATGCGCTGC CCAGCGCCGC TTATATCATC AAAGCAAATG TGGATAGTAT CGGTCTGGCC
GACGGCATGG CTTACTGGAA CCTGACTGAT AGCGGTGAAG AGGGCAGTGG TGCACAATCC
TTCTCCGGCG GTAACGGATT ACTCAACTAC CAGGGTATTG CCAAACCCGC TTTTCATGCT
TACCGCATGT TGCATACATT GGGCGATGAA CTGCTGTATA ACAAAGACGG TATCATCGTC
ACACGCCATA AGGCCGGTCA GCGGCTTACC GCTCTTGTGT ATAACTATCC GGCAACACTG
AAAACAGTAC CTCCGTTTGG TGGTACAGAT GTAGCAGAGA ATACACTGAA AATGGGAGAA
GCCCGCGAGT TTAACTTTAA ACTACTCAAT ACCAACAAAG ACGCACGCTT TAACGTCGAA
ATCCTTGACC GTGAAAACGG TAACGCACTC AATGCATTGC AACAGGCGGG TAATCCGGAT
GCCCTGAGTG GGGATCAGTT GCGACTCATG CAGCTAAGAG CAATGGCTGT GAGAGAAGAA
CAGGTATTGT CGAATAATAC AGGCATATTG CTGATCGGCA AGACGCTGCA ACCCTGGGAT
GTGATGCTGA TAGACGAAAC ACATTAG
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| Protein sequence | MERRKFLKQA IVSAAGSALI PGIVAGRSLW EEQPPLIIDT KVQGRTFSHF WSKCVGAGRA
GEVLRTGSPW LEHLQLGQKH CGFQYCRLHG IFHDDMSVYQ GGVYNWLRVD DVINRMLKAG
VKPFVELSFF PREMAGGAAT AYWWKANVSP PGDFSKWSQL VTNFAKHCIE KFGIGEVSSW
YFEVWNEPNI RATWDGSKSQ YFAMYKATAQ ALKTVSPQLR VGGPATSNFV GDGRFDGETE
DKSKISVTAG DPEALKWKGV WIEDFLEYCK QQQVPVDFIS THPYPTDMPF NNGKGTLRGV
DATLKDLQWL RAVVDKSAFP KAEIHLSEWG TSSSGRDAMH DALPSAAYII KANVDSIGLA
DGMAYWNLTD SGEEGSGAQS FSGGNGLLNY QGIAKPAFHA YRMLHTLGDE LLYNKDGIIV
TRHKAGQRLT ALVYNYPATL KTVPPFGGTD VAENTLKMGE AREFNFKLLN TNKDARFNVE
ILDRENGNAL NALQQAGNPD ALSGDQLRLM QLRAMAVREE QVLSNNTGIL LIGKTLQPWD
VMLIDETH
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