| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6866 |
|---|
| Symbol | |
|---|
| ID | 8363058 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 8598103 |
|---|
| End bp | 8599002 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644968999 |
|---|
| Product | histone deacetylase superfamily |
|---|
| Protein accession | YP_003126468 |
|---|
| Protein GI | 256425815 |
|---|
| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.859971 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.144342 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGGTTG CCTACGATCC CATATTTGCA CATCCGCTTC CTGAAGGACA CCGCTTTCCG
ATGGTCAAGT ATGAACTGAT TCCCGCACAA TTGTTACGGG AAGGTATTAT CAGCGAACAG
CAACTACATA TACCAGCTCC GGCTGAGGAA TCTACTATCC TGCTCACACA CACCGCACAT
TACTGGCAAC AATTACAACA CCAGACATTA TCTGATAAAG AACAAAGACG TATTGGTCTG
CCGCAATCAC CGGCATTGAC CTTGAGAGAA ATCGTGATCA GTCAGGGTAC AATCGACTGT
GCATTACATG CCATGGAACA TGGTGTTGCC CTGAATGTAG CCGGTGGTAC GCATCACGCA
TTTGCAGATC GTGGAGAAGG CTTCTGTTTG CTGAATGACT TTGCCATTGC CGCAAACTAT
CTGTTACATC AGCAACTGGT GAAAAAAGTA TTGATCATTG ATCTCGATGT ACACCAGGGA
AATGGCACTG CTGCCTTATT TGAAGGCAGA CCGGAAGTCT ATACTTTCAG TATGCATGGC
GCACACAATT ATCCATTTCA CAAAGAAGTA TCCGACTGGG ATGTGCCCTT ACCGGATGGT
ATGAACGATG TTGATTACCT GCGTACGCTC GGTGAATGTC TTCCCGTGTT GATCAATAAA
GTAAAACCTG ATATTGTATT TTATCTGTCG GGTGTGGATA TCCTGCAAAC CGACCGTTAT
GGCAAATTGC AGGTAACACA TGAAGGTTGC CGTAAGCGGG ATGAAATGGT CTTTCATACC
TTAAAGCAGC ATGGTATTCC TTGTACAGTA GCTATGGGCG GTGGATATTC CACACAGATC
AGGGACATTG TAAATGCGCA TTGTAATACA TTCAGAACAG CAGCGGAAAT CTGGGGATAA
|
|---|
| Protein sequence | MLVAYDPIFA HPLPEGHRFP MVKYELIPAQ LLREGIISEQ QLHIPAPAEE STILLTHTAH
YWQQLQHQTL SDKEQRRIGL PQSPALTLRE IVISQGTIDC ALHAMEHGVA LNVAGGTHHA
FADRGEGFCL LNDFAIAANY LLHQQLVKKV LIIDLDVHQG NGTAALFEGR PEVYTFSMHG
AHNYPFHKEV SDWDVPLPDG MNDVDYLRTL GECLPVLINK VKPDIVFYLS GVDILQTDRY
GKLQVTHEGC RKRDEMVFHT LKQHGIPCTV AMGGGYSTQI RDIVNAHCNT FRTAAEIWG
|
|---|
| |