Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_6808 |
Symbol | |
ID | 8363000 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 8527441 |
End bp | 8530563 |
Gene Length | 3123 bp |
Protein Length | 1040 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 644968941 |
Product | TonB-dependent receptor plug |
Protein accession | YP_003126410 |
Protein GI | 256425757 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.14685 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0000111053 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGAGAATGT ATCAATTATT CCGGCTTGCC AGGTGCAGGT ATCTGCTGCT TTTGCTGGTC CTGCAGTGCT TTACCGCCGT TGCTGCTTTC GCACAGGTAA AGCTGTCCGG TAAGGTAACA GATGAAACGG GTGCATCGCT ACCCGGCATC ACGGTAGCCA TCAGGGGGAC AAAACTGGGT GCAACCACAT CGGTGGATGG TAACTATACC ATCAATGCTG ATCTGAACCC CGGTAGTTAC ACACTCGTAT TTACAGGTAT CGGATTTGCA CAGAAGGAAG GTAGTGTGGA GATTGGCAGT GCCAGCTCCT ATACACTGAA TCAACAGCTG GCTACGTCCG TATCCAAACT GGATGAAGTA GTGATCACCG GTGCTTCTAT CGGTACTACC CGAAAACAGT TAGGGAGTTA TGTCAGCAGT GTCAAAGCAG ATGAGTTGAG TAAAGGCGCT ACTGCTAACG TGCTCACTGC CCTGCAGGGT AAAACAGCTG GTGCACAGAT TACACAGAAC TCCGGTGATC CTGCCGGTGG TATGTCTGTA AAACTGCGTG GTATCAGTAC GATCAGTGGT TCTACTGAGC CACTTTACAT CATAGATGGT GTTATTATAG ATAACTCCAC TACGCGTGTA ACCAACGCCG ACGCATCTTA TGCAGGTGGC AGCTTTGCAG GTAATGTTGG TCAGAACCGT ATGGTGGATA TCAACCCTGC TGACATCGAA CGTATAGAAG TGCTGAATGG CGCTGCCGCA GCTGCGATCT ATGGTTCCAG AGCGAACGCC GGTGTTGTAC AGATCTTTAC AAAGAAAGGC GCGGGTGGTG CTCCTGTAGT GAATTTCTCT ACCAGCTTCA ATGTAAACGA GCTGCGTAAG AAACTGGATG TGAACCAGGC GCCGGTAAAG TTTGGCGGTA CCCCGGATGT GTCTACCCAG ACCATTCTGA CACCGACTAT CACCAATACT ACTGCGATAC AGCGTTATGA CTACCAGGAC TATATTTTCC GCACAGGTGT TGGTACTGAT AATAACGTAT CTGTAACTGG TGGACAGAAT AAAACGAGGT ATTATGCATC TGCGGGTTAT CTGTACAATC AGGGTATTGT AAGAAATACA GATTTCAACC GTTACAGTTT CCGGCTGAAC CTGGATCAGG AGTTGAACAA ATGGCTGAGC TTCAATGCTT CTGTAAATTA TATCTACAGT AAGACAAACG AGAAACCAGA TGGTAACTCT TTCTTCTCTC CAACGAATGC AGTAACCATC ATCGGTAACT ATTACGATCT GCAACAAAGA AATGCGTTGG GTAACCTGGT GGCAGTCGGA GAGCGCGGTC GTGTAAACCC GGTTTCTATC ATTGAAGATT TTAAACAACA ACAACAGACC AGCAGGATTA TCACCGGTGC AGGTTTAAAA CTGACGCCGT TCAAAAACCT GACGATAGAT TATCATATGG GTATTGATAA CTATAGCCAG GATGGTACTA CCTTCATTCC CCCTTTCGCT TATAATGTAA GCCTGTCCTT TTTCGGCGGC GGCGCTAACC TGGATCCTAC GCAGAACGGT TATGCGAGCA CCGGTGTTAA TAATTCTTTC CTGATCAACC ACGATATCAA TGCGACTTAT AATGCGCAGA TCACGCCGGA CCTGTCATCT GTAACACAGG TAGGTTATTC TTTGCAGTAT CAGAATGTGC ATTACTCACT GCAACAGGGT AGAGGTTTAC CACCATTTGT GCAAACCGTA AGTGGTGCAG CTACACTGAT ACCAGGTACA GATGAACGAA CCAAACTATC TATCTCTGGT CAGTTCATTC AGCAGAACTT CAAATACCGT GATCAGTTGT TTGTAACTGG TGCATTAAGA CGTGATGGTT CTTCTGTATT TGGTCAGGAT GAACGTAATC AGATCTATAC TAAACTGAGT GGTAGCTATG TGTTGTCAGG TACAGATTAC TGGAAAGATC TGGGTGTGTC CAATTGGTGG AACCTGTTCA AACTCAGGGC TGCTTATGGT CAGTCGGGTA ACCTGACAGG GATCCCTGCT TATGGACGTT TCAATACCTA CAAAGCGATG GCGTTTGTAG GTGCGGCTTC GTTTACATCT CCGACCACTT ACACCAACCC GGATATCAAA CCTGAGAGAC AGGAAGAACT GGAGTTCGGT ACAGACATGG CTTTTGCGAA TAACCGCATC AACCTTTCTG TGAACTACTA CACCAAAAAG GTAAAAGACC TGCTGATCGC ACGTGCAATT GCACCTACAC AAGGTTACAG CACCCGTCTT GATAATATCG GGTCTCTTTC TAACAAAGGT TTTGAAGTAG TATTGAATGT AGTGCCGGTG AAAACAAAGA GCTTCAACTG GGATATGACG GCTATCTTCA ACCGTAACAG AAACAAAGCA ATCGACATCG GACAGTCTAT CATCCTGTAT TCAACGGTGA GTGGTGCACC GGTTGCGATT GCCAATGGTG AGCCGATTGG CTTCTTCTAC GGTACTTTCT TTGCACGTGA CGCCAGTGGT AACCAGCTGA AAACAGCTGC CGGTATTCCT GTAACAGAAG CAGGTGTACA GAACACACCG TTCTCCTACA CACCGGCAAG AGATCCTAAT ACAGGTTTGC CACCAACTAC CGGCGTAACT GCTTTACAAA GAAAAATTGG TGATCCGAAT CCTGACTGGA CTGGTACACT GACCAACGAC TTCACCTATA AAAAATTCAG TCTGCATACA CAGGTTGACT TTGTACAGGG TGTTGACGTA TTCAATGCTG ACTTCAGAAC AAGACAGGGT GTGGATAATG GTAAAGTGGC TGAACAGGAA GACCTGGGTT TATTACCACG TGGATTTATT GCGGGTAACT ACAACATCCA GGAGTGGAGA GTGGACGATG GTTCTTTTGT AAAACTGAGA GAAGTATCCC TCAGTTATAA TATCGGTAAA ATTAAAGGTC TGAGCGATCT CACAGTAAGT GTGGGCGGAC GTAACCTGCA TTCATGGGAT AACTACAAAG GATATGATCC GGAAGTGAAT GCGGCAGGTC AGAGTACTGT ATTGCGCGGT ATTGATTTTG GTAGCGTACC AGCTCCAAGA ACGTATAATG TTGCACTGCG CGCCAGATTC TAA
|
Protein sequence | MRMYQLFRLA RCRYLLLLLV LQCFTAVAAF AQVKLSGKVT DETGASLPGI TVAIRGTKLG ATTSVDGNYT INADLNPGSY TLVFTGIGFA QKEGSVEIGS ASSYTLNQQL ATSVSKLDEV VITGASIGTT RKQLGSYVSS VKADELSKGA TANVLTALQG KTAGAQITQN SGDPAGGMSV KLRGISTISG STEPLYIIDG VIIDNSTTRV TNADASYAGG SFAGNVGQNR MVDINPADIE RIEVLNGAAA AAIYGSRANA GVVQIFTKKG AGGAPVVNFS TSFNVNELRK KLDVNQAPVK FGGTPDVSTQ TILTPTITNT TAIQRYDYQD YIFRTGVGTD NNVSVTGGQN KTRYYASAGY LYNQGIVRNT DFNRYSFRLN LDQELNKWLS FNASVNYIYS KTNEKPDGNS FFSPTNAVTI IGNYYDLQQR NALGNLVAVG ERGRVNPVSI IEDFKQQQQT SRIITGAGLK LTPFKNLTID YHMGIDNYSQ DGTTFIPPFA YNVSLSFFGG GANLDPTQNG YASTGVNNSF LINHDINATY NAQITPDLSS VTQVGYSLQY QNVHYSLQQG RGLPPFVQTV SGAATLIPGT DERTKLSISG QFIQQNFKYR DQLFVTGALR RDGSSVFGQD ERNQIYTKLS GSYVLSGTDY WKDLGVSNWW NLFKLRAAYG QSGNLTGIPA YGRFNTYKAM AFVGAASFTS PTTYTNPDIK PERQEELEFG TDMAFANNRI NLSVNYYTKK VKDLLIARAI APTQGYSTRL DNIGSLSNKG FEVVLNVVPV KTKSFNWDMT AIFNRNRNKA IDIGQSIILY STVSGAPVAI ANGEPIGFFY GTFFARDASG NQLKTAAGIP VTEAGVQNTP FSYTPARDPN TGLPPTTGVT ALQRKIGDPN PDWTGTLTND FTYKKFSLHT QVDFVQGVDV FNADFRTRQG VDNGKVAEQE DLGLLPRGFI AGNYNIQEWR VDDGSFVKLR EVSLSYNIGK IKGLSDLTVS VGGRNLHSWD NYKGYDPEVN AAGQSTVLRG IDFGSVPAPR TYNVALRARF
|
| |