| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6176 |
|---|
| Symbol | |
|---|
| ID | 8362358 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 7795108 |
|---|
| End bp | 7795968 |
|---|
| Gene Length | 861 bp |
|---|
| Protein Length | 286 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644968306 |
|---|
| Product | beta-lactamase |
|---|
| Protein accession | YP_003125785 |
|---|
| Protein GI | 256425132 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG2367] Beta-lactamase class A |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.0566092 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGAT ACCTGCTTTT CTTCCTGCTG CTGCCAGCGC TAACATTTGC ACAACAGGAC
CGTAAACTGG AAAAAGGACT AAGAGCAATC ATTACCGGCT TCCAGGGCGA TGTAGGCATT
TATGTCAGAA ACCTGAAAAC AGGACGGTAT GTGGATATCA ACGCCGACAC CATCTTCCCT
ACCGCCAGTA TCGTAAAGGT CCCTATCCTG GTTGGTGTAT TTGATAAGAT AGAAAAAGGG
GAACTCTCCT ACCATCAGCC GCTGATGTAT CGTGATTCCA TTAAATACGG TGGCTCCGGA
TTAATGCAAT TCTTCAAAGA CAGCACGGAG ACTGACCTGA GCGTATTAGT CGCCTTAATG
ATGGCCTACA GCGATAACAC CACCTCTCTC TGGAATCAGG CATTGGCAGG GGGCGGACAG
CGCATCAATG AACTCATGGC CCAATATGGA CTCAATAATA CCCGCGTAAA TTCTCGTACG
CCTGGCCGGG AAGCGATAAG AAATGTATAT GGCTGGGGAA TGACCACACC ACGCGAAATG
TCAGAACTGC TTGTCAAGAT CCGCAAGGGA GAAGTGATCA GTGAGAATGC CTCTTCCCGG
ATGTACAGAC TGATGACACA CGGTTATTAT GATGAAGTGG GACTGTCGCA GATCCCTCCT
TATACACAAG CCGCCCACAA ATCAGGCTCC GTGGATGCAT CCAGATCAGA AGTTATCCTG
GTCAATGCCC CGCACGGTGA ATATGTGTTC TATGTTGGTA CTAAAAACAA CAAAGACCAA
CGCTGGACCA ATGAAAACGA AGCAGAAAAC CTGATCAGAA AAGTCTCAGC TTATCTCTGG
GATTACTACG AACATCACTA A
|
|---|
| Protein sequence | MKRYLLFFLL LPALTFAQQD RKLEKGLRAI ITGFQGDVGI YVRNLKTGRY VDINADTIFP
TASIVKVPIL VGVFDKIEKG ELSYHQPLMY RDSIKYGGSG LMQFFKDSTE TDLSVLVALM
MAYSDNTTSL WNQALAGGGQ RINELMAQYG LNNTRVNSRT PGREAIRNVY GWGMTTPREM
SELLVKIRKG EVISENASSR MYRLMTHGYY DEVGLSQIPP YTQAAHKSGS VDASRSEVIL
VNAPHGEYVF YVGTKNNKDQ RWTNENEAEN LIRKVSAYLW DYYEHH
|
|---|
| |