Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_5946 |
Symbol | ddl |
ID | 8362127 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 7549587 |
End bp | 7550576 |
Gene Length | 990 bp |
Protein Length | 329 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 644968085 |
Product | D-alanyl-alanine synthetase A |
Protein accession | YP_003125565 |
Protein GI | 256424912 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.588243 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.0506502 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAAAAGA ACATCGCCCT GGTAGCCGGT GGATACTCCG GTGAATATGT AATTTCAGTT CAAAGTGCAG CCGTAATAGA GAAACATCTT GACAGCAGCA AGTATAATGT CTATAAGATC TCTGTTACCC GCGATGGATG GAACTACACA GGTTCCGATG GTCAGCTGAT CGCAGTAGAC AGGAACGATT TTACATTGAC TATCAATGGG AATAAGGTGA TATTCGACGC TGTTTTCATC GGTATACATG GTACGCCGGG TGAAGATGGC CGTCTGCAGG GATATTTTGA AATGCTTGGC ATTCCATTCA CCAGCTGTGG AATGGTTACG TCGGCCCTGA CATTCAACAA GAGCTACTGT AACAAGGTAG TCGCTTCTCT TGGTGTTGTA AATGTTTCAA AATCAGTACA TATTTTCAAA GATCAGCCTT TTGATATCCA GGCTATCCTC CAGGAACTGA AACTGCCCGT GTTTGTGAAA CCGGCAGAAG GTGGCAGCAG CATCGGGATG TCCAAAGTGA ACACGGCAGA AGAACTGGCG CCGGCTATTG AAAAAGCCTT TAATGAAGAT GTACAGATCC TTATAGAAGA GTTTGTGAAA GGCAGAGAGA TCACCTGTGG TCTCTACAGA TCAAATGGTG CATTTACCGT ACTGCCTGTA ACCGAAATCA TCAGCAGCAA AGAATTCTTC GATTACGAAG CGAAATATAC CCCGGGTGTA TCCAGAGAGG TAACGCCTGC GGAAGCGCCA AATGAAATAG TGAACCAGAT TCAGGAGACT GCTAAAAAGC TGTATAATAA ACTGAACTGC CGTGGTATTG TGAGAATGGA CTTCATCTGG GAAGAAGCCA GCAACCGTTT GTTCTTCCTG GAAGTGAATA CGATGCCGGG ACAGTCTGAA AACAGCATCG TTCCTCAGCA GGTAAGAGCC GCTGGTAAAA CCCTGCAGGA GTTTTACGGC ACATTAATTG AAGAATGCCT GAGGAAATAA
|
Protein sequence | MKKNIALVAG GYSGEYVISV QSAAVIEKHL DSSKYNVYKI SVTRDGWNYT GSDGQLIAVD RNDFTLTING NKVIFDAVFI GIHGTPGEDG RLQGYFEMLG IPFTSCGMVT SALTFNKSYC NKVVASLGVV NVSKSVHIFK DQPFDIQAIL QELKLPVFVK PAEGGSSIGM SKVNTAEELA PAIEKAFNED VQILIEEFVK GREITCGLYR SNGAFTVLPV TEIISSKEFF DYEAKYTPGV SREVTPAEAP NEIVNQIQET AKKLYNKLNC RGIVRMDFIW EEASNRLFFL EVNTMPGQSE NSIVPQQVRA AGKTLQEFYG TLIEECLRK
|
| |