| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5702 |
|---|
| Symbol | |
|---|
| ID | 8361882 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 7269623 |
|---|
| End bp | 7270582 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644967845 |
|---|
| Product | transcriptional regulator, AraC family |
|---|
| Protein accession | YP_003125326 |
|---|
| Protein GI | 256424673 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.946416 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATAT CAATCACGGA TAGAGGGACT GGCATTACCC GCGAATTTGC CCATGCAATA
GGCGCCGCTA TCAGAGGAAG GTTCATCGAT ATTCCTGAAA ACATGGGCAC AGGATACATC
ACCGGCTTTT CCTGGGGAAA GGAACTACGT ATGATGATCC GGAATTATTA TCTGAAAGAG
GATGTGTATA TTGAGCGTAC TAATAAACTC GAAGAAGGGC AGGAGGATAT TGTTTTCCTG
TTAAGCGGTA TCTTCCCCTC TATACTACAA CCCGATGAAC AAATCTTACC GGAACAGGCC
AATATTATGA TTTGTAAACA CGCGGTTTCA TCTGTATTAG CGATGCCTTC AAACACAATG
TTTGGCAGTG TGACAATCGC CGTTGCTAAA CAATACCTGC ATCAGTTGTT TGGAAAAATA
GATCACCCGG TCGTAGCAAG TGTACTGGAA GGGAAAGATA ACTTTGTGTT TGAAACCGGT
ATTTCAACAG CCATCATTAA TACCGCCAGC GGAATGTTGG GCCAGCCTGT TCCGGAAACC
CTGGAAAGCC ATTACTATAA ACTGAAATGC GAGGAACTGC TGTGTTATGT ATTTACCATG
CTGATGCAAC GGGAAATAGT ACCGGCCACC GGTATGCATA TCGATGATAT CAAAGCCATA
TACGCTATTA AAGCCCGTTT ACAAGCTAAG CTGGATGAAC CTCCCAACAT AGCGGCACTG
GCAAAAGAAG CAGGCATGAG TGAACCTAAA CTACGAAAGC TGTTTAAACA GACCTTCGGA
AAAGGGGTGT TTGAATATTA TCAGTCCGGA CGAATGCAGG AAGCCGCCAG ACTATTAAAA
GAGAGACGAC TGACAGTCTC CGAAGTGGGC TATCAGTTAG GATTTACTAA CCTCAGCCAT
TTCTCCCGGG TATTTGAACA GTACATGGGT AGCAAGCCTA AGAAATATTC AAAGACGTAA
|
|---|
| Protein sequence | MKISITDRGT GITREFAHAI GAAIRGRFID IPENMGTGYI TGFSWGKELR MMIRNYYLKE
DVYIERTNKL EEGQEDIVFL LSGIFPSILQ PDEQILPEQA NIMICKHAVS SVLAMPSNTM
FGSVTIAVAK QYLHQLFGKI DHPVVASVLE GKDNFVFETG ISTAIINTAS GMLGQPVPET
LESHYYKLKC EELLCYVFTM LMQREIVPAT GMHIDDIKAI YAIKARLQAK LDEPPNIAAL
AKEAGMSEPK LRKLFKQTFG KGVFEYYQSG RMQEAARLLK ERRLTVSEVG YQLGFTNLSH
FSRVFEQYMG SKPKKYSKT
|
|---|
| |